Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,920,314 – 11,920,404 |
Length | 90 |
Max. P | 0.532524 |
Location | 11,920,314 – 11,920,404 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 86.73 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -18.24 |
Energy contribution | -18.77 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.06 |
Mean z-score | -2.77 |
Structure conservation index | 0.73 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11920314 90 - 27905053 GCGGCGGCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAAGAGGCAAAGCCACAACAAAACAUGAA-AAACU- (.(((.(((.....((((((((((((((...........)))).)))))))))).......)))...))).).............-.....- ( -25.30) >DroSec_CAF1 25068 85 - 1 ------GCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU- ------((((....((((((((((((((...........)))).))))))))))..)))).(((...))).....................- ( -22.20) >DroSim_CAF1 24984 85 - 1 ------GCUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU- ------((((....((((((((((((((...........)))).))))))))))..)))).(((...))).....................- ( -22.20) >DroEre_CAF1 24889 91 - 1 GCGGCGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU- (.(((..(((((..((((((((((((((...........)))).))))))))))..).)))).....))).)...................- ( -27.30) >DroYak_CAF1 25291 91 - 1 GCGGUGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAAACAACU- ((..((.(((((..((((((((((((((...........)))).))))))))))..).)))).))..))......................- ( -26.10) >DroAna_CAF1 43133 90 - 1 ACUGCGACUGCAGUUGUGUGUGCAUUUCUACGCCCACUUGGAGCUGCCUACACAAGCAGC-GCCAGAGUCGCCACA-AACAUGAUAGAAUGU ...((((((......(((.(((........))).)))((((.(((((........)))))-.))))))))))....-.((((......)))) ( -27.80) >consensus GCGGCGACUGCAGCUGUGUGUGCAUUUCUACACCCACUUGAAGCUGCAUACACAAAUAGCAGGCAAAGCCACAACAAAACAUGAACGAACU_ .......((((...((((((((((((((...........)))).))))))))))....)))).............................. (-18.24 = -18.77 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:50 2006