Locus 4494

Sequence ID 3R_DroMel_CAF1
Location 11,908,118 – 11,908,210
Length 92
Max. P 0.665479
window7348

overview

Window 8

Location 11,908,118 – 11,908,210
Length 92
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -23.34
Consensus MFE -15.16
Energy contribution -15.72
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -2.09
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.665479
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11908118 92 - 27905053
GGUAUGGACUAGGGGGGAAAUACCUAUUAAAUUAGCUCU----CCCAUUCGAAUGGAUGGGAAAAUAUAAGAUGAAGCCCGAACCGAACCAAAAGC
(((.(((....(((((......))..............(----(((((((....))))))))...............)))...))).)))...... ( -24.50)
>DroSec_CAF1 13196 90 - 1
GGUG-GGAAUAGGGGGGAAAUACCUAUUAAAUUAGCUCUCCCUCCCAUUCGGAUGGAUGGGAAAAUAUAAAAUAAAGCCCGA-----ACCAAAUGC
((((-((.....((((((.....(((......))).))))))((((((((....))))))))...............)))..-----)))...... ( -26.30)
>DroSim_CAF1 12999 91 - 1
GGUG-GGACUAGGGGGGAAAUACCUAUUAAAUUAGCUCU----CCCAUUCGGAUGGAUGGGAAAAUAUAAAAUAAAGCCCGAACCGAACCAAACGC
(((.-((....(((((......))..............(----(((((((....))))))))...............)))...))..)))...... ( -23.20)
>DroEre_CAF1 12465 85 - 1
GGGG-GGG-UUUGGGGGAAAUACCUUUUAAAUUAGCUCU----CCCGUUCGGAUGGAUGGGAAAAUAUAAAAUAAAGCCCGA-----ACCAAACGA
((((-(((-((.((((......)))).......))))))----)))..(((..(((.((((................)))).-----.)))..))) ( -25.09)
>DroYak_CAF1 12628 85 - 1
GGAG-AUA-UUGGGGGGAAAUACCUUUUAAAUUAGCUCU----CCCGUUCGGAUGGAUGGGAAAAUAUAAAAUAAAGCCGAA-----ACCAAACGC
.(((-...-((((((((.....)))))))).....)))(----(((((((....))))))))....................-----......... ( -17.60)
>consensus
GGUG_GGA_UAGGGGGGAAAUACCUAUUAAAUUAGCUCU____CCCAUUCGGAUGGAUGGGAAAAUAUAAAAUAAAGCCCGA_____ACCAAACGC
(((........(((((......))...................(((((((....)))))))................))).......)))...... (-15.16 = -15.72 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:47 2006