Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,904,826 – 11,904,936 |
Length | 110 |
Max. P | 0.796959 |
Location | 11,904,826 – 11,904,936 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -42.60 |
Consensus MFE | -24.26 |
Energy contribution | -24.35 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.15 |
Mean z-score | -2.04 |
Structure conservation index | 0.57 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11904826 110 - 27905053 GGCCCAGGUGCAAGCUGUGAGCUGCAUUCAGACACAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACUUGGCAGCGGC-AGC---------GCCGAUC (((((((((.((....(((((((((((....((..((((((.((....))))))))...(....)..))....)))))))).)))))))))))..((...-.))---------))).... ( -41.60) >DroPse_CAF1 11040 118 - 1 GGCACAGGUGCAGGCGGUGCGGUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACU-GCCACCCGG-UACGAGUACCCAGCAUAUC .((...(((((((.(((((((((((((((....(.((((((.((....)))))))).).(....).)).....)))).))))))))).))-).)))).((-((....))))..))..... ( -47.40) >DroGri_CAF1 11402 110 - 1 GGCUCAGGUGCAGGCGGUGCGCUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUAUAUGAAAGAGGUAACUAUGCGGCUGCAGUAGCCAGCGAGUCCC-AAC---------AACAAUG (((((.(((((((((...)).))))))).....((((((((.((....))))))))..........(((.(((..((....))))).))).)))))))..-...---------....... ( -36.20) >DroMoj_CAF1 10220 111 - 1 GGCGCAGGUGCGGGCGGUGCGCUGCAUACAAACACAGGUGGAGAUCUAUCCCACCUAUAUGAAAGAGGUAACUAUGCAGCUGCACUAGCCAGCGAGUCCCCAGC---------AAUAAUG .((...(((((.(((((((((((((((........((((((.((....)))))))).........((....))))))))).))))).))).)))...))...))---------....... ( -40.50) >DroAna_CAF1 26819 102 - 1 GGCCCAGGUGCAGGCGGUGCGGUGCAUUCAGACCCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACCUGGCAGAA------------------GAUC .(((.((((.....(((((((((((((....(((.((((((.((....))))))))...(....).)))....)))).))))))))))))))))....------------------.... ( -42.50) >DroPer_CAF1 11033 118 - 1 GGCACAGGUGCAGGCGGUGCGGUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACU-GCCACCCGG-UACGAGUACCCAGCAUAUC .((...(((((((.(((((((((((((((....(.((((((.((....)))))))).).(....).)).....)))).))))))))).))-).)))).((-((....))))..))..... ( -47.40) >consensus GGCACAGGUGCAGGCGGUGCGCUGCAUCCAAACGCAGGUGGAGAUCUAUCCCACCUACACGAAAGAGGUAACUAUGCGGCUGCACUGACC_GCCAGCCGC_AAC_________GCAAAUC .((......)).(((((((((.(((((....((..((((((.((....))))))))...(....)..))....))))).).)))))).)).............................. (-24.26 = -24.35 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:46 2006