Locus 4492

Sequence ID 3R_DroMel_CAF1
Location 11,899,949 – 11,900,042
Length 93
Max. P 0.802765
window7346

overview

Window 6

Location 11,899,949 – 11,900,042
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.80
Mean single sequence MFE -24.31
Consensus MFE -13.66
Energy contribution -14.25
Covariance contribution 0.59
Combinations/Pair 1.19
Mean z-score -2.75
Structure conservation index 0.56
SVM decision value 0.62
SVM RNA-class probability 0.802765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11899949 93 - 27905053
CAUAAAUAUUAAAUUCCUAAACAAACACAAAACACACCGGCCAUUGGAUGG---GGCUUCCAUGCUGACAUUGACAGCGG-CGAAGCUCCUCCGCC------A
......................................(((....(((.((---((((((..(((((.......))))).-.))))))))))))))------. ( -27.00)
>DroSec_CAF1 5075 88 - 1
CAUAAAUAUUAAAUUCCUAAACAAACACAAAACACCCCGGCCAUAGGAUGG---GGCUUCCAUGCUGACAUUGACAGCGG-CGAAGCUCCUC-----------
..............(((((........................))))).((---((((((..(((((.......))))).-.))))))))..----------- ( -21.36)
>DroSim_CAF1 4910 93 - 1
CAUAAAUAUUAAAUUCCUAAACAAACACAAAACACACCGGCCAUAGGAUGG---GGCUUCCAUGCUGACAUUGACAGCGG-CGAAGCUCCUCCGCC------A
......................................(((....(((.((---((((((..(((((.......))))).-.))))))))))))))------. ( -27.00)
>DroEre_CAF1 4538 86 - 1
CAUAAAUAUUAAAUUCCUAAACAAAC-------ACACCGGCGAUAGGAUGG---GGCUUCCAUGCUGACAUUGACAGCGG-CGAAGCUCCUCCGCC------U
..........................-------.....(((....(((.((---((((((..(((((.......))))).-.))))))))))))))------. ( -26.50)
>DroYak_CAF1 4526 86 - 1
CAUAAAUAUUAAAUUCCUAAACAAAC-------ACACCGGCGGUAGGACGG---GGCUUCCAUGCUGACAUUGACAGCGG-CGAAGCUCCUCCGCC------U
..........................-------.....(((((......((---((((((..(((((.......))))).-.)))))))).)))))------. ( -27.80)
>DroAna_CAF1 21958 97 - 1
CGUAAAUAUUAAAUUCCUAAACAAACAA-AAA-----CAGAGAAAGAAAAGAAAAGGUACCACGCUGACAUUGACAGCGGGGGAAGAUUCUCCGCCCACUGCC
............................-...-----..................((((....((((.......))))((((((......))).)))..)))) ( -16.20)
>consensus
CAUAAAUAUUAAAUUCCUAAACAAACAC_AAA_ACACCGGCCAUAGGAUGG___GGCUUCCAUGCUGACAUUGACAGCGG_CGAAGCUCCUCCGCC______A
.............................................(((.((...((((((..(((((.......)))))...))))))))))).......... (-13.66 = -14.25 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:45 2006