Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,894,987 – 11,895,107 |
Length | 120 |
Max. P | 0.594380 |
Location | 11,894,987 – 11,895,107 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -39.13 |
Consensus MFE | -38.53 |
Energy contribution | -39.53 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.98 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11894987 120 + 27905053 UCCGGUUUGUUGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUUGUUUACACGCACACACA ....((..((((((((((..(((....)))))).).))))))..))...(((((((((..((((....))))..(((......(((((.((......)).)))))..)))))).)))))) ( -38.10) >DroEre_CAF1 53217 120 + 1 UCCGGUUUGUGUGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA ....(((..((.((.((((((((.......)))).)))).)).))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). ( -37.80) >DroYak_CAF1 52512 120 + 1 UCCGGUUUGUGGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA ....(((..(((((.((((((((.......)))).)))).)))))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). ( -41.50) >consensus UCCGGUUUGUGGGCCGGUAUGGCUUUGGCCGCCAGUGCCAGCUUAUGAAUGUGUGGCGACGAUGGCGACGUCACUGUUAUUCUACAAUAAGAAAAAGCUAAUGGUUUACACGCACACACA ....(((..(((((.((((((((.......)))).)))).)))))..)))((((((((..((((....))))(((((((((((......)))).....))))))).....))).))))). (-38.53 = -39.53 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:41 2006