Locus 449

Sequence ID 3R_DroMel_CAF1
Location 1,715,119 – 1,715,211
Length 92
Max. P 0.821697
window727

overview

Window 7

Location 1,715,119 – 1,715,211
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 86.01
Mean single sequence MFE -17.80
Consensus MFE -15.64
Energy contribution -15.89
Covariance contribution 0.25
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.88
SVM decision value 0.68
SVM RNA-class probability 0.821697
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1715119 92 + 27905053
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCUCACCUCCCCCAUCCGCA-ACUCCAGCCACUUUCU--CUCUCU
..((((((((.....(((........))))))))))).......(((((.....................-...)))))........--...... ( -17.96)
>DroSec_CAF1 24209 94 + 1
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCUCACCUCCCCCUUCCGCA-ACUCCAGCCACUUUCUUUCUCUCU
..((((((((.....(((........))))))))))).......(((((.....................-...)))))................ ( -17.96)
>DroSim_CAF1 25431 94 + 1
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCUCACCUCCCCCAUCCGCA-ACUCCAGCCACUUUCUUUCUCUCU
..((((((((.....(((........))))))))))).......(((((.....................-...)))))................ ( -17.96)
>DroEre_CAF1 24803 91 + 1
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCCCACCUCCCCCAUCCGCA--CUCCGGCCACUUUCUUUC--CUU
...(((((((.....(((........))))))))))(((.....(((((............)))...)).--.....)))..........--... ( -18.50)
>DroYak_CAF1 24252 91 + 1
AAUGUAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCUCGCCUCCCCCAUCCGCAAACCCCAGCCACUUUCUUUC----U
..((((((((.....(((........))))))))))).......(((((.....((...........)).....)))))...........----. ( -18.10)
>DroAna_CAF1 21866 75 + 1
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCCCGCUCCA--------------CUC----CAUUUCCUUUC--UUU
...(((((((.....(((........))))))))))((.....(((......)))...--------------..)----)..........--... ( -16.30)
>consensus
AAUGCAGGGAUAAUAGACAAAUAACAGUUUCCCUGCGGCAUUUAGCUGGCUCUCACCUCCCCCAUCCGCA_ACUCCAGCCACUUUCUUUC__UCU
...(((((((.....(((........))))))))))(((.....)))((((.........................))))............... (-15.64 = -15.89 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:26 2006