Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,890,446 – 11,890,544 |
Length | 98 |
Max. P | 0.500000 |
Location | 11,890,446 – 11,890,544 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -41.23 |
Consensus MFE | -29.10 |
Energy contribution | -28.66 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.24 |
Mean z-score | -3.22 |
Structure conservation index | 0.71 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11890446 98 + 27905053 UGGAUACCACGCGAGGAUCGCCUCAUGCAG-AACGGCUUCCUUGCGAUGUCGUUUUGGGUGAGGUGCCUGCA----AAUGUUCUGGUGGCGGUUU-CUAGUGAU ((((.(((.(((.(((((((((((((.(((-((((((.((.....)).))))))))).))))))))......----...))))).)))..))).)-)))..... ( -41.40) >DroSec_CAF1 46571 98 + 1 UGGAUACCACGCGCGGAUCGCCUCAUGCAG-AACGGCUUCCUUGCGAUGUCGUUUUGGGUGAGGUGCCUGCA----AAUGUUCUGGUGGCGGUUU-CUAGUGAU ((((.(((.(((.((((.((((((((.(((-((((((.((.....)).))))))))).))))))))...((.----...)))))))))..))).)-)))..... ( -39.50) >DroSim_CAF1 47255 96 + 1 UGGAUACCACGCGCGGAUCGCCUCAUGCAG-AACGGCUUCC-UGCGAUGUCGUUUUGGGUGAGGUGCCAGCA----AAUGUUCUGGUGGCGGU-U-CUAGUGAU .........(((..((((((((((((.(((-((((((.((.-...)).))))))))).)))))))((((.((----.......)).)))))))-)-)..))).. ( -40.90) >DroEre_CAF1 47392 98 + 1 UGGAUACCAUGCGAGGAUCGCCUCAUGCAG-AACGGCUUCCUUGCGAUGUCGUUUUGGGUGAGGUGCCUGUA----AUUGCUCUGGUGGCGGUGU-CUAGUGAU ((((((((.(((.(((..((((((((.(((-((((((.((.....)).))))))))).))))))))))))))----...(((.....))))))))-)))..... ( -44.00) >DroYak_CAF1 47863 99 + 1 UGGAUACCAUACGAGGGUCGCCUCAUGCAAAAACGGCUUCCUUGCGAUGUCGUUUUGGGUGAGGUGCCUGCA----AUUGCUCUGGUGGCGGUGU-CUAGUGAU ((((((((.(((.((((.((((((((.(((((.((((.((.....)).))))))))).)))))))))).((.----...)).)).)))..)))))-)))..... ( -42.70) >DroAna_CAF1 49316 103 + 1 UUAAAACCAUGCGAGGAUCGCCUCAUGCAG-AACGGCCUCCUUAAGGUGUCGUUUUGGGUGAGGUGUUUGCAUUACACUUUCUUAGUGGCUGUUUGCGAGUGAU ........(((((((...((((((((.(((-((((((..((....)).))))))))).)))))))))))))))..((((.....))))((.....))....... ( -38.90) >consensus UGGAUACCACGCGAGGAUCGCCUCAUGCAG_AACGGCUUCCUUGCGAUGUCGUUUUGGGUGAGGUGCCUGCA____AAUGUUCUGGUGGCGGUUU_CUAGUGAU (((..(((.(((.(((((((((((((.(((.((((((.((.....)).))))))))).)))))))).............))))).)))..)))...)))..... (-29.10 = -28.66 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:40 2006