Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,889,514 – 11,889,610 |
Length | 96 |
Max. P | 0.677412 |
Location | 11,889,514 – 11,889,610 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 78.11 |
Mean single sequence MFE | -25.22 |
Consensus MFE | -16.50 |
Energy contribution | -16.67 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.26 |
Mean z-score | -1.38 |
Structure conservation index | 0.65 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11889514 96 - 27905053 CAUCCAGCCGUUGGUCUUCAGCAGCAAAGAUGGACUAUCCAAGCGCUACAAUCUGCGCAAGGUGAGCUCGGCC---------AUAUG-----CAUAUCUCUAUUAUAUAA ......((...(((((...(((.((.....(((.....))).((((........))))...))..))).))))---------)...)-----)................. ( -22.60) >DroSec_CAF1 45639 96 - 1 CAUCCAGCCGUUGGUCUUCAGCAGCAAGGAUGGACUCUCCAAACGCUACAAUCUGCGCAAGGUAAGCUGGUCU---------AUAUA-----CAUAGCUCUAUUAUAUAA ...(((((.((((.....)))).((..(..(((.....)))..)((........)))).......)))))..(---------(((((-----.(((....))))))))). ( -20.60) >DroSim_CAF1 46324 95 - 1 CAUCCAGCCGUUGGUCUUCAGCAGCAAAGAUGGACUCUCCAAACGCUACAAUCUGCGCAAGGUAAGCUGGUUC---------AUAUA-----CGUA-CUCUAUUAUAUAA ...(((((.(((.(((((........))))).)))...((...(((........)))...))...)))))...---------.....-----....-............. ( -19.00) >DroEre_CAF1 46462 96 - 1 CAUUCAGCCGUUGGUCUUCAGCAGCAAGGAUGGGCUCUCUAAGCGCUACAAUCUGCGCAAGGUGAGCUGGGCA---------AUAUA-----GAUAUCUAUAUUAUAUUA (((((.((.((((.....)))).))..)))))(((((.((..((((........))))..)).)))))....(---------(((((-----(....)))))))...... ( -30.10) >DroYak_CAF1 46924 103 - 1 CAUUCAGCCGUUGGUCUUCAGCAGCAAGGAUGGACUCUCUAAGCGCUACAAUCUGCGCAAGGUGAGCUGGGCAGGGUA----AUAUA---CUAAUACCCAUAUCAUAUUA ..((((((.(((.(((((........))))).)))((.((..((((........))))..)).))))))))..(((((----.....---....)))))........... ( -27.50) >DroMoj_CAF1 55203 104 - 1 UAUACAACCGCUGGUCUUCACCAGCAAGGAUGGUCUCUCCAAGCGCUACAAUUUGCGCAAGGUAAGUAAAGAG-AAUGAGCUACUCAAUA--CCAAUCC---UUGCUUAA .........((((((....))))))(((((((((((((((..((((........))))..)).......))))-).((((...))))...--)).))))---))...... ( -31.51) >consensus CAUCCAGCCGUUGGUCUUCAGCAGCAAGGAUGGACUCUCCAAGCGCUACAAUCUGCGCAAGGUAAGCUGGGCA_________AUAUA_____CAUAUCUCUAUUAUAUAA ...(((((.(((.(((((........))))).)))...((..((((........))))..))...)))))........................................ (-16.50 = -16.67 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:39 2006