Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,886,474 – 11,886,591 |
Length | 117 |
Max. P | 0.500000 |
Location | 11,886,474 – 11,886,591 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -26.21 |
Energy contribution | -26.13 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.32 |
Mean z-score | -1.28 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11886474 117 - 27905053 UCCCGCGACGAGAACUGGAAGGCCAAGUUGGCCAAAAUGAAGGCCCGGGUUGGUUUCAAGGCGGCAAUUCGUGUGGCCACCAUUUCCUCACGUUACGCCAAAACCAGCAAGGGAGGA ((((....((..((((((....)).))))((((........)))))).((((((((...((((......((((.((.........)).))))...)))).))))))))..))))... ( -39.60) >DroVir_CAF1 67473 117 - 1 UCGCGCGAUGAGAACUGGAAGGCCAAGCUAGCUAAGAUGAAAGCGCGCGUUGGUUUUAAGGCGGCUAUACGAGUGGCUACCAUUUCCUCGCGCUAUGCCAGGCCCAAGAAUGGCGAG ..((((((.((((.....((((((((((..(((........)))..)).))))))))..((..(((((....)))))..)).)))).))))))..(((((..(....)..))))).. ( -43.20) >DroGri_CAF1 60074 117 - 1 UCGCGCGAUGAGAAUUGGAAGGCAAAGUUGGCCAAGAUGAAGGCGCGCGUCGGCUUCAAGGCGGCCAUAAGAGUGGCUACCAUUUCGUCGCGCUAUGCUAAGCCAAAGAAUGGCGAC ..(((((((((((..(((.((.((....(((((....(((((.((.....)).)))))....)))))......)).)).))))))))))))))........((((.....))))... ( -47.70) >DroWil_CAF1 66004 117 - 1 UCUCGUGAUGAAAACUGGAAGGCCAAGCUGGCUAAAAUGAAAGCGCGGGUGGGCUUCAAAGCGGCCAUACGUGUGGCUACCAUAUCGUCACGCUACUCCAAACCCGCUAAAGGUGAU ...((((((((......((((.(((..((((((........))).))).))).)))).....((((((....))))))......))))))))............(((.....))).. ( -36.40) >DroMoj_CAF1 52139 117 - 1 UCUCGCGACGAAAACUGGAAGGCCAAACUGGCCAAGAUGAAGGCACGCGUAGGCUUCAAGGCGGCCAUCAGAGUGGCUACGAUUUCCUCGCGCUAUGGCAAGCCGAAGAAUGACGAG .(((((((.((((..(((....)))...((((((...(((.(((.(((.(........).)))))).)))...))))))...)))).)))).((.(((....))).))......))) ( -38.10) >DroAna_CAF1 45341 117 - 1 UCGCGAGACGAGAACUGGAAGGCCAAACUGGCCAAGAUGAAGGCUCGCGUCGGCUUCAAGGCAGCCAUUCGUGUGGCCACCAUCUCAUCGCGCUACUCCAAGACCUCCAAGGGCGGC ..((((...((((..(((..((((.....))))........((((((((..((((.......))))...)))).)))).))))))).))))((..(((...(....)...)))..)) ( -41.00) >consensus UCGCGCGACGAGAACUGGAAGGCCAAGCUGGCCAAGAUGAAGGCGCGCGUCGGCUUCAAGGCGGCCAUACGAGUGGCUACCAUUUCCUCGCGCUACGCCAAGCCCAAGAAUGGCGAC ...(((((.((((..(((..(((((...(((((....(((((.(.......).)))))....)))))......))))).))))))).)))))......................... (-26.21 = -26.13 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:38 2006