Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,879,662 – 11,879,760 |
Length | 98 |
Max. P | 0.943651 |
Location | 11,879,662 – 11,879,760 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -18.91 |
Energy contribution | -19.35 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.27 |
Mean z-score | -2.19 |
Structure conservation index | 0.56 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11879662 98 + 27905053 CCACUACAGGGGCACGUAAGGUCUUGAAAAAACCGGCGACGGUUAGUGGAGGAGGAGCUACAUCUGCCCCAACUGCAGCUCUUAAA---GCGGGUGGAAAA ((((....(((((((....).((((.(...(((((....)))))..).))))............))))))..((((..........---)))))))).... ( -32.50) >DroGri_CAF1 53134 89 + 1 CCACGACAGGUGCCCGCAAGGUGAUUAAAAAACCAGCGGCAG------------CAGCAAGUGCAGCACCCGCUGCAUUAUCCAAGGCAGUCAGUGGCAAA (((((((.(.(((((((..(((.........))).))))..)------------)).).((((((((....))))))))..........))).)))).... ( -32.80) >DroSec_CAF1 35842 95 + 1 CCACCACAGGGGCACGUAAGGUCUUGAAAAAACCGGCGACAGUUAGUGGAGGAG---CUACAUCUGCUCCAACUGCAGCUCUAAAA---GCGGGUGGAAAG (((((...(((((.(....)))))).........(((..((((...(((((.((---......)).)))))))))..)))......---...))))).... ( -30.40) >DroSim_CAF1 36500 98 + 1 CCACCACAGGGGCACGUAAGGUCUUGAAAAAACCGGCAACGGUUAGUGGAGGAGGAUCUACAUCUGCCCCAACUGCAGCUCUUAAA---GCGGGUGGAAAA (((((...((((((.((.............(((((....))))).(((((......))))))).)))))).......(((.....)---)).))))).... ( -37.90) >DroEre_CAF1 36579 98 + 1 CCACCACAGGGGCACGUAAGGUUUUAAAAAAGCCGGCGGCUGUUGUUGGAGGAGGAGCUACAUCUAACCCUGCGGCAGCUUCUAAA---GCAGGUGGAAAA (((((.....(((.(((..(((((.....))))).))))))(((((((.(((.(((......)))...))).))))))).......---...))))).... ( -33.30) >DroYak_CAF1 37107 98 + 1 CCACUACAGGGGCCCGUAAGGUUUUGAAAAAGCCGGCGGCUGUUGGUGGAGGAGGAGCUACAUCUGCCCCUGCUGCAGCUUCUAAA---GCGGGUGGAAAA (((((.(((((((((((..(((((.....))))).)))).....((((.((......)).)))).))))))).....(((.....)---)).))))).... ( -35.10) >consensus CCACCACAGGGGCACGUAAGGUCUUGAAAAAACCGGCGACAGUUAGUGGAGGAGGAGCUACAUCUGCCCCAACUGCAGCUCCUAAA___GCGGGUGGAAAA (((((...(((((.(((..(((.........))).))).......((((........))))....)))))....((.............)).))))).... (-18.91 = -19.35 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:37 2006