| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,869,769 – 11,869,889 |
| Length | 120 |
| Max. P | 0.560381 |
| Location | 11,869,769 – 11,869,889 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.33 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -23.70 |
| Energy contribution | -23.07 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.560381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11869769 120 + 27905053 AGCCGCUGGCAUUCCGGAGAUCGGAGUAAAGAGUUUUGAGCCCCUAAACAUUGACCAGGUGUCGGUAUCCAAGGGCAGCGGCAACCUGGUGCUAUCCGGAGGAUUUCAAGACCUGGUCAU .(((...)))((((((.....)))))).....((((.(.....).))))..(((((((((.(.((.((((..((..((((.(.....).))))..))...)))).)).).))))))))). ( -42.50) >DroVir_CAF1 49094 120 + 1 GGCCGCUGGCAUACCAGAGAUUGGUGUGAAGAGCUUCGAACCGCUGAACAUUGAUCAGGUAUCUGUUUCGAAGGGCAGCGGAAAUUUGGUUCUGUCCGGCGGCUUUCAAAAUCUUGUCAU (((((((((((((((((...)))))))).((((((.....((((((..(.((((.(((....)))..)))).)..))))))......))))))..)))))))))................ ( -48.80) >DroGri_CAF1 41865 120 + 1 UGCCGCUGGCAUUCCAGAGAUUGGUGUGAGGAGCUUCGAUCCGCUGAAUAUUGAUCAGGUAUCUGUUUCAAAAGGCAGUGGAAAUUUGAUUCUGUCCGGCGGCUUUCAAAACCUUAUCAU .(((((((((((.((((...)))).)))...((..(((((((((((..(.((((.(((....)))..)))).)..)))))))...))))..))..))))))))................. ( -38.50) >DroWil_CAF1 48065 120 + 1 GGCCGCUGGCAUACCGGAGAUUGGAGUGAAAAGUUUUGAGCCACUUAAUAUCGACCAAGUGUCCGUGAGCAAAGGUAGCGGUAAUUUAGUUUUAUCCGGUGGAUUUCAAAAUCUAGUGAU ...(((((((((.(((.....))).)))....(((((((.(((((..(((..(((.((((..((((..((....)).))))..)))).))).)))..)))))...))))))))))))).. ( -29.40) >DroMoj_CAF1 33570 120 + 1 GGCUGCUGGAAUACCAGAAAUUGGAGUUAAAAGCUUUGAGCCACUGAACAUUGAUCAGGUAUCCGUAUCCAAGGGCAGCGGAAAUCUGGUGCUAUCCGGGGGCUUCCAGAAUCUAGUCGU (((((((((((.........(..((((.....))))..)(((.(((.......(((((((.(((((.((....))..))))).)))))))......))).)))))))))....))))).. ( -36.82) >DroAna_CAF1 27746 120 + 1 GGCCGCUGGCAUCCCCGAGAUCGGAGUGAAAAGCUUUGAGCCUCUAAAUAUUGACCAGGUGUCCGUGUCGAAAGGUAGCGGUAACCUGGUGCUAUCCGGUGGCUUCCAAAACCUGGUCAU (((((((((.......(((.(((((((.....)))))))..))).........(((((((..((((..(....)...))))..))))))).....))))))))).(((.....))).... ( -45.80) >consensus GGCCGCUGGCAUACCAGAGAUUGGAGUGAAAAGCUUUGAGCCACUGAACAUUGACCAGGUAUCCGUAUCCAAAGGCAGCGGAAAUCUGGUGCUAUCCGGCGGCUUUCAAAACCUAGUCAU .((((((((.............((..((((....))))..))...........(((((((..((((..(....)...))))..))))))).....))))))))................. (-23.70 = -23.07 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:36 2006