Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,866,176 – 11,866,328 |
Length | 152 |
Max. P | 0.891581 |
Location | 11,866,176 – 11,866,293 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -16.54 |
Energy contribution | -18.23 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.15 |
Mean z-score | -2.42 |
Structure conservation index | 0.57 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11866176 117 + 27905053 UAAUUAAGUUUAGCUAAUUGUGUGA-CUUUCUGAAACGUAUUUUCGGAAUA-GCUUAGUUCUAGCUAACUAUCAUGAAUUAGCUAUGUUUAAUUGAAUUUUGGGUCGCAAAUGGGG-UUU ((((((((..(((((((((.(((((-..((((((((.....))))))))((-(((.......)))))....))))))))))))))..))))))))......((..(.(....).).-.)) ( -28.30) >DroSec_CAF1 22549 118 + 1 UAAUUAAGUUUAGCUAAUUGUGUGC-CUUUCUGAAACGUAUUUUCGGAAUA-GCUUAAUUCUAGCUAAGUACCAUGAAUUAGCUUAGUUUAAUUGAAUUUCGGGUCGCAAGUGGGACUUU (((((((..(.((((((((((((((-..((((((((.....))))))))((-(((.......))))).))).))).)))))))).)..)))))))......(((((.(....).))))). ( -30.80) >DroEre_CAF1 23040 116 + 1 UAAUUAAGUUUAGCUAAUUAUGUAUAUUUUCAGAAGCGUUUUUUAGGACUAGGCGCGAUUC----UAAGUACCAUAAAUUGGCUAAAUUUAAUUGAAUUUCGAGUCGCAAAUGUGGUCUU ((((((((((((((((((((((..(((((..(((.((((((.........))))))...))----)))))).))).)))))))))))))))))))......(((((((....)))).))) ( -30.30) >DroYak_CAF1 23653 116 + 1 UAAUUAAGUUUAGCUAAUUGUGUUCCCUAUCUGCAACGUAUUUUGGGAAUAAGAUUGAUUC----UAAGUACCAUUAACUAGCUAAAUUUAAUUGAAUUCCGAGUCGCAAAUAGGCCCUU ((((((((((((((((.((((((((((....(((...)))....)))))))(((.....))----).........))).))))))))))))))))......(.(((.......))).).. ( -26.60) >consensus UAAUUAAGUUUAGCUAAUUGUGUGC_CUUUCUGAAACGUAUUUUCGGAAUA_GCUUAAUUC____UAAGUACCAUGAAUUAGCUAAAUUUAAUUGAAUUUCGAGUCGCAAAUGGGGCCUU ((((((((((((((((((((((.......(((((((.....)))))))....(((((........)))))..))).)))))))))))))))))))......................... (-16.54 = -18.23 + 1.69)
Location | 11,866,215 – 11,866,328 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -21.82 |
Consensus MFE | -12.02 |
Energy contribution | -12.84 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -2.11 |
Structure conservation index | 0.55 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520131 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11866215 113 - 27905053 AAACUAAGUGCCAUUCAGGCAGCUCUUAAACUAAAAAA-CCCCAUUUGCGACCCAAAAUUCAAUUAAACAUAGCUAAUUCAUGAUAGUUAGCUAGAACUAAGC-UAUUCCGAAAA .........(((.....)))((((..............-.....((((.....)))).............(((((((((......)))))))))......)))-).......... ( -15.60) >DroSec_CAF1 22588 114 - 1 AAACUAAGUGCCAUUCAGGCAGCUCUUAAACUAGAAAAGUCCCACUUGCGACCCGAAAUUCAAUUAAACUAAGCUAAUUCAUGGUACUUAGCUAGAAUUAAGC-UAUUCCGAAAA ...(((((((((((((.((..(((((......))).(((.....)))))..)).)))....(((((........)))))..))))))))))...((((.....-.))))...... ( -21.30) >DroEre_CAF1 23080 111 - 1 AAACUAAGUGCCAUUCAGGCAGCUCUUAACCAAUAAAGACCACAUUUGCGACUCGAAAUUCAAUUAAAUUUAGCCAAUUUAUGGUACUUA----GAAUCGCGCCUAGUCCUAAAA ...(((((((((((...(((.(.((((........)))).)..............(((((......))))).))).....))))))))))----).................... ( -21.20) >DroYak_CAF1 23693 111 - 1 AAACUAAGUGCCAUUCUGGCAGCUCUUAACUAAGAAAGGGCCUAUUUGCGACUCGGAAUUCAAUUAAAUUUAGCUAGUUAAUGGUACUUA----GAAUCAAUCUUAUUCCCAAAA ...(((((((((((((((((.((((((........))))))..............(((((......))))).)))))..)))))))))))----).................... ( -29.20) >consensus AAACUAAGUGCCAUUCAGGCAGCUCUUAAACAAGAAAAGCCCCAUUUGCGACCCGAAAUUCAAUUAAACUUAGCUAAUUCAUGGUACUUA____GAAUCAAGC_UAUUCCGAAAA ...(((((((((((...(((.((........................))((........))...........))).....)))))))))))........................ (-12.02 = -12.84 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:35 2006