Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,852,842 – 11,852,938 |
Length | 96 |
Max. P | 0.995358 |
Location | 11,852,842 – 11,852,938 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -21.30 |
Consensus MFE | -19.98 |
Energy contribution | -20.26 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -1.58 |
Structure conservation index | 0.94 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11852842 96 + 27905053 CAUUAGACCGCUGUUAAGUGCCAUUCAAUGAUCUAUUUCAACGAUUGGCGAACUGCAACUUUGUGUGAGAACAGUUACAGCUUAACUUAGACAUAA ............(((((((((((.((..(((......)))..)).)))).(((((...(((.....)))..)))))...))))))).......... ( -20.70) >DroSec_CAF1 9359 96 + 1 CAUUAGACCGCUGUUAAGUGUCAUUCAAUGAUCUAUUUCAAUGAUUGGCGAACUGCAACUUUGUGUGAGAAUAGUUACAGCUUAAAUUAGACAUAA .........(((((....(((((.(((.(((......))).))).)))))(((((...(((.....)))..))))))))))............... ( -18.70) >DroSim_CAF1 9309 95 + 1 CAUUAGACCGCUGUUAAGUGCCAUUCAAUGAUCUAUUUCAAUGAUUGGCGAACUGCACCUUU-UGUGAGAACAGUUACAGCUUAAAUUAGACAUAA .........(((((....(((((.(((.(((......))).))).)))))(((((...(((.-...)))..))))))))))............... ( -23.20) >DroEre_CAF1 9493 96 + 1 CAUUAGAUCGCUUUUAAGAGCCAUUCAAUGAUCUAUUUCAAUGAUUGGCGAACUGCAACUUUGUGUGAGAACAGUUACAGCUUAAAUUAGACAUAA ..(((..((...((((((.((((.(((.(((......))).))).)))).(((((...(((.....)))..)))))....))))))...))..))) ( -21.70) >DroYak_CAF1 10034 96 + 1 CAUUAGAUCGCUGUUAAGUGCCAUUCAAUGAUCUAUUUCAAUGAUUGGCGAACUGCAACUUUGUGUGAAAACAGUUACAGCUUAAAUUAGACAUAA .........(((((....(((((.(((.(((......))).))).)))))(((((..((.....)).....))))))))))............... ( -22.20) >consensus CAUUAGACCGCUGUUAAGUGCCAUUCAAUGAUCUAUUUCAAUGAUUGGCGAACUGCAACUUUGUGUGAGAACAGUUACAGCUUAAAUUAGACAUAA .........(((((.....((((.(((.(((......))).))).)))).(((((...(((.....)))..))))))))))............... (-19.98 = -20.26 + 0.28)
Location | 11,852,842 – 11,852,938 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.62 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -19.98 |
Energy contribution | -19.98 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -2.10 |
Structure conservation index | 0.88 |
SVM decision value | 2.57 |
SVM RNA-class probability | 0.995358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11852842 96 - 27905053 UUAUGUCUAAGUUAAGCUGUAACUGUUCUCACACAAAGUUGCAGUUCGCCAAUCGUUGAAAUAGAUCAUUGAAUGGCACUUAACAGCGGUCUAAUG ...(((.(((((..((((((((((............)))))))))).((((.(((.(((......))).))).))))))))))))........... ( -25.00) >DroSec_CAF1 9359 96 - 1 UUAUGUCUAAUUUAAGCUGUAACUAUUCUCACACAAAGUUGCAGUUCGCCAAUCAUUGAAAUAGAUCAUUGAAUGACACUUAACAGCGGUCUAAUG ...((((.......((((((((((............))))))))))......(((.(((......))).)))..)))).................. ( -16.60) >DroSim_CAF1 9309 95 - 1 UUAUGUCUAAUUUAAGCUGUAACUGUUCUCACA-AAAGGUGCAGUUCGCCAAUCAUUGAAAUAGAUCAUUGAAUGGCACUUAACAGCGGUCUAAUG ...............(((((((((((.((....-...)).)))))).((((.(((.(((......))).))).)))).....)))))......... ( -24.30) >DroEre_CAF1 9493 96 - 1 UUAUGUCUAAUUUAAGCUGUAACUGUUCUCACACAAAGUUGCAGUUCGCCAAUCAUUGAAAUAGAUCAUUGAAUGGCUCUUAAAAGCGAUCUAAUG (((.(((...((((((((((((((............))))))))...((((.(((.(((......))).))).)))).))))))...))).))).. ( -23.40) >DroYak_CAF1 10034 96 - 1 UUAUGUCUAAUUUAAGCUGUAACUGUUUUCACACAAAGUUGCAGUUCGCCAAUCAUUGAAAUAGAUCAUUGAAUGGCACUUAACAGCGAUCUAAUG (((.(((.......((((((((((............)))))))))).((((.(((.(((......))).))).))))..........))).))).. ( -23.70) >consensus UUAUGUCUAAUUUAAGCUGUAACUGUUCUCACACAAAGUUGCAGUUCGCCAAUCAUUGAAAUAGAUCAUUGAAUGGCACUUAACAGCGGUCUAAUG (((..((.......((((((((((............)))))))))).((((.(((.(((......))).))).))))..........))..))).. (-19.98 = -19.98 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:31 2006