| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,839,655 – 11,839,745 |
| Length | 90 |
| Max. P | 0.973044 |
| Location | 11,839,655 – 11,839,745 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 93.32 |
| Mean single sequence MFE | -28.05 |
| Consensus MFE | -25.77 |
| Energy contribution | -25.37 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.973044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11839655 90 + 27905053 -------GAGGGCGAAGGUUGCGAUUGAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAGAGUCUUAUCUCACUUUCAUUAGCCAACUG -------...(((((((((.......(((.(((((.....))((((((....))))))))).)))((((......))))))))))....)))..... ( -26.60) >DroSec_CAF1 19571 90 + 1 -------GAGGGCGAAGGUUACGAUUGAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAGAGUCUUAUCGCACUUUCAUUAGCCAACUG -------((((((.(.(((....)))..).))))))......((((((....))))))((((((.((((((........))))))))).)))..... ( -26.10) >DroSim_CAF1 21066 90 + 1 -------GAGGGCGAAGGUUACGAUUAAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAGAGUCUUAUCUCACUUUCAUUAGCCAACUG -------((((((.................))))))......((((((....))))))((((((.((((((........))))))))).)))..... ( -25.33) >DroEre_CAF1 23562 90 + 1 -------GAGGGCUAAGGCUGCGAUUGAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAAAGUCUUAUCUCACUUUCAUUAGCCAACUG -------...((((((((((((.(((((.......)))))..((((((....)))))).))))))((((((........)))))).))))))..... ( -32.10) >DroYak_CAF1 24210 97 + 1 GAGCCGAGAGGGCUAAGGUUGCGAUUGAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAAGGUCUUAUCUCACUUUCAUUAGCCAACUG ..(((.(((((((((.(((....)))..))))))))).....((((((....)))))))))....((((((........))))))............ ( -30.10) >consensus _______GAGGGCGAAGGUUGCGAUUGAUGGCCCUUUAAUAGAGCUGUAAAUGCAGCUGGCAGUCGAGAGUCUUAUCUCACUUUCAUUAGCCAACUG .......((((((.................))))))......((((((....))))))((((((.((((((........))))))))).)))..... (-25.77 = -25.37 + -0.40)
| Location | 11,839,655 – 11,839,745 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 93.32 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -21.25 |
| Energy contribution | -21.45 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11839655 90 - 27905053 CAGUUGGCUAAUGAAAGUGAGAUAAGACUCUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUCAAUCGCAACCUUCGCCCUC------- ((((((((...(((.(((........))).)))...))))))))..................(((((.................))))).------- ( -21.83) >DroSec_CAF1 19571 90 - 1 CAGUUGGCUAAUGAAAGUGCGAUAAGACUCUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUCAAUCGUAACCUUCGCCCUC------- ((((((((...(((.(((.(.....)))).)))...))))))))..................(((((.................))))).------- ( -21.93) >DroSim_CAF1 21066 90 - 1 CAGUUGGCUAAUGAAAGUGAGAUAAGACUCUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUUAAUCGUAACCUUCGCCCUC------- ((((((((...(((.(((........))).)))...))))))))..................(((((.................))))).------- ( -21.83) >DroEre_CAF1 23562 90 - 1 CAGUUGGCUAAUGAAAGUGAGAUAAGACUUUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUCAAUCGCAGCCUUAGCCCUC------- .....(((((((((((((........))))))).......((((((((....(((((.....)))))....))).))))).))))))...------- ( -26.30) >DroYak_CAF1 24210 97 - 1 CAGUUGGCUAAUGAAAGUGAGAUAAGACCUUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUCAAUCGCAACCUUAGCCCUCUCGGCUC ((((((((...((((.((........)).))))...))))))))........(((((.....)))))................((((.....)))). ( -24.30) >consensus CAGUUGGCUAAUGAAAGUGAGAUAAGACUCUCGACUGCCAGCUGCAUUUACAGCUCUAUUAAAGGGCCAUCAAUCGCAACCUUCGCCCUC_______ ((((((((...(((.(((........))).)))...))))))))..................(((((.................)))))........ (-21.25 = -21.45 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:25 2006