Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,708,846 – 1,708,948 |
Length | 102 |
Max. P | 0.656387 |
Location | 1,708,846 – 1,708,948 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -19.30 |
Energy contribution | -19.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.69 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1708846 102 - 27905053 -------UCGCAGGAAAACAGGCAG----CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGAUAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC -------..((..(....)..)).(----((((((.(((((....))))).))).)))).((((((.......(((....(((((((((....))))))))))))..)))))) ( -25.00) >DroSec_CAF1 17752 105 - 1 -------UCGCAGGCAAACAGGCAGCUAGCUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCA-UUGAUAACUCAAUUGAUUUCUAAUUGUC -------.....(((((..(((..((..(((((((.(((((....))))).))).)))).)).................(((((-((((....)))).))))))))..))))) ( -22.90) >DroSim_CAF1 19125 102 - 1 -------UCGCAGGCAAACAGGCAG----CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC -------.....((((((((.((.(----((((((.(((((....))))).))).)))).))...)))...........((((((((((....)))))))))).....))))) ( -29.90) >DroEre_CAF1 18736 108 - 1 CAGUCAGUCGGAGGCAAGCG-GCUG----CUUCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC ..(.((((..((.(((.(((-((((----(((((...((((....)))))))))).))))))...)))...........((((((((((....))))))))))))..)))).) ( -35.90) >DroYak_CAF1 18305 101 - 1 -------UCAAAGGCAAACU-GCUG----CUUCUUGUGUUGAUCACAACAAAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC -------((((..(((...(-((.(----((((((.(((((....))))).))).)))).)))..)))...))))....((((((((((....)))))))))).......... ( -26.50) >consensus _______UCGCAGGCAAACAGGCAG____CUCCUUGUGUUGAUAACAACAGAAGCGGGCCGCAAGUGUAAAUUGAAACCAAUCAAUUGAUAACUCAAUUGAUUUCUAAUUGUC ............(((((............((.(((.(((((....))))).))).))(((....).))...........((((((((((....)))))))))).....))))) (-19.30 = -19.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006