Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,836,853 – 11,836,954 |
Length | 101 |
Max. P | 0.774565 |
Location | 11,836,853 – 11,836,954 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 85.36 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -21.66 |
Energy contribution | -20.74 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.75 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774565 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11836853 101 + 27905053 UUG-------GCUGGGUGGCCAAGAUAUGUGGCUAACUUACAGAUUGCAGCUCUUCGAAGAAAAGAAAGCAAGGAGUUGGUACGGAUUGCCAUAGGGGCUUAGCAUUA ...-------(((((((..((......((((((...(.(((.((((.(.(((.(((........))))))..).)))).))).)....)))))).))))))))).... ( -26.10) >DroSec_CAF1 16727 101 + 1 UUG-------GCUGGGUGGCCAAGAUAUGUGGCUAACUUACAGAUUGCAGCUCUUUGAAGAAAAGAAAGCAAGGAGUUUGUACGAAUUGCAAUAGGGGCUUAGCUUUA ..(-------((((((((((((.......)))))......(..((((((((((((((............))))))))..........))))))..).))))))))... ( -28.00) >DroSim_CAF1 18231 101 + 1 UUG-------GCUGGGUGGCCAAGAUAUGUGGCUAACUUACAGAUUGCAGCUCUUCGAAGAAAAGAAAGCAAGGAGUUUGUAUGAAUUGCAAUGGGGGCUUAGCUUUA ..(-------((((((((((((.......)))))..(.((((((((.(.(((.(((........))))))..).)))))))).).............))))))))... ( -26.30) >DroEre_CAF1 20683 107 + 1 UUGGUGGCCAGCUGGGUGGCCAAGAUACGUGGCUAAAUUACAGAUUGCAGCUCUUCAAAGAACAGAAAGCUGAGAAUUUGUACUACUUGAAAGAUGGGUUUAGCUAU- (((((.(((.....))).))))).....((((((((((((((((((.(((((.(((........))))))))..))))))))(((.((....)))))))))))))))- ( -35.60) >DroYak_CAF1 21253 101 + 1 UUG-------GCUGGGUGGCCAAGAUAUGUGGCCAACUUACAGAUUGCAGCUCUUCAAAGAAAGGAAAGCUGGAAAUUUGUAUGACUUGAAAGAUGGGUUUAGCUUUA ..(-------((((((((((((.......)))))).(.((((((((.(((((.(((.......))).)))))..)))))))).)..............)))))))... ( -29.00) >consensus UUG_______GCUGGGUGGCCAAGAUAUGUGGCUAACUUACAGAUUGCAGCUCUUCGAAGAAAAGAAAGCAAGGAGUUUGUACGAAUUGCAAUAGGGGCUUAGCUUUA ..........((((((((((((.......)))))).(.((((((((...(((.(((........))))))....)))))))).)..............)))))).... (-21.66 = -20.74 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:21 2006