Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,835,678 – 11,835,783 |
Length | 105 |
Max. P | 0.994199 |
Location | 11,835,678 – 11,835,783 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 94.47 |
Mean single sequence MFE | -35.46 |
Consensus MFE | -30.10 |
Energy contribution | -31.10 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.29 |
Structure conservation index | 0.85 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11835678 105 + 27905053 GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAAGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU--- (((((...((......))..)))))....(((..(((((((((..........)))))))))....-..(((((.(((.....))).)))))....))).......--- ( -36.20) >DroSec_CAF1 15551 106 + 1 GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAGGCGCAGAGUGCAGCCACCCAAAAAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU--- (((((...((......))..)))))...........((.((((((((((.....)).))).........(((((.(((.....))).)))))..)))))...))..--- ( -34.10) >DroSim_CAF1 17056 105 + 1 GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAGGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU--- (((((...((......))..)))))....(((..(((((((((..........)))))))))....-..(((((.(((.....))).)))))....))).......--- ( -36.20) >DroEre_CAF1 19517 104 + 1 GGGUUAAUAGAAUUUACUUGAACCCAAUUUGGCUGCGGUUGGAAAGCGCAGCGUGCAGCCGCCCAA--AGGGAGAGCCAUUACGGAACUUCCAUUUGCAUCUCCAU--- (((((...((......))..))))).....(((((((((((.......)))).)))))))...(((--((((((..((.....))..))))).)))).........--- ( -33.90) >DroYak_CAF1 20060 108 + 1 GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCUGCGGUUGAAAAGCGCAGAGUGCAGCCGCCCAA-AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCGCCAUGGC (((((...((......))..))))).....(((.(((((((....((.....)).))))))).(((-(.(((((.(((.....))).))))).)))).........))) ( -36.90) >consensus GGGUUAAUAGAAUUUACUUGAACCCAAUUUGCCAGCGGUUGCAAAGCGCAGAGUGCAGCCGCCCAA_AAGGGAGAGCCAUUACGGCACUUCCAUUUGCAUCUCCAU___ (((((...((......))..)))))....(((..((((((((...((.....)))))))))).......(((((.(((.....))).)))))....))).......... (-30.10 = -31.10 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:18 2006