Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,835,415 – 11,835,535 |
Length | 120 |
Max. P | 0.547756 |
Location | 11,835,415 – 11,835,535 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.17 |
Mean single sequence MFE | -40.55 |
Consensus MFE | -30.67 |
Energy contribution | -33.15 |
Covariance contribution | 2.48 |
Combinations/Pair | 1.12 |
Mean z-score | -2.79 |
Structure conservation index | 0.76 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.547756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11835415 120 - 27905053 GGAGGUCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAAAGUUAAGCUUUCUUUGUUUACGCUCCGAAGAGUUGUCACUUGGCUAACGAAUGUUCAUUCGUUUAUUUAUGGAUUGGACACUC .((((((((((((.((....(((((.((((((((((.........))))))))))...)))))...((((....)))).)).(((((((....))))))).......))))))))).))) ( -40.30) >DroSec_CAF1 15288 120 - 1 GGAGGUCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAGAGUUAAGCUUUCUUUGUUUACGCUCCGAGGAGUUGUCACUUGGCUAACGAAUGCUCAUUCGUUUAUUUAUGGAUUGGACACUC .((((((((((((.((....(((((.(((((((((((.......)))))))))))...)))))...((((....)))).)).(((((((....))))))).......))))))))).))) ( -43.80) >DroSim_CAF1 16786 120 - 1 GGAGGUCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAGAGUUAAGCUUUCUUUGUUUACGCUCCGAGGAGUUGUCACUUGGCUAACGAAUGUUCAUUCGUUUAUUUAUGGAUUGGACACUC .((((((((((((.((....(((((.(((((((((((.......)))))))))))...)))))...((((....)))).)).(((((((....))))))).......))))))))).))) ( -43.80) >DroEre_CAF1 19254 120 - 1 GGAGGUCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAGAGUUAAGCUUUCUUUGUUUACGCUCCGAGGAGUUGUCACUUGGCUAACGAAUGUUCAUUCGUUUAUUUAUGGAUUGGACACUC .((((((((((((.((....(((((.(((((((((((.......)))))))))))...)))))...((((....)))).)).(((((((....))))))).......))))))))).))) ( -43.80) >DroYak_CAF1 19797 120 - 1 GGAGGCCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAGAGUUAAGCUUUCUUUGUUUACGCUUCGAGGAGUUGUCAUUUGGCUAACGAAUGUUCAUUCGUUUAUUUAUGGAUUGGACACUC (..(((((((((((...((((..(..(((((((((((.......)))))))))))..).))))..)))))))......))))..)((.(((((((((((......))))).)))))).)) ( -39.10) >DroAna_CAF1 14458 116 - 1 CUA---CCAGGUGAGCUGCAGGAAACCCAGGUGAAAGAGUGAAGCUUUCUUUGUUUACGCUCCGAAGAGUUGUCACUUGACUAAAUAAUGCUCAUUCGUAUUCUUACGGAU-GGCGAUUC ...---.(((((((.(((..(....).)))......(((((((((.......)))).)))))..........))))))).........(((.((((((((....)))))))-)))).... ( -32.50) >consensus GGAGGUCCAAUUCCGCAGAAGGAGCUGGCAAGGAAAGAGUUAAGCUUUCUUUGUUUACGCUCCGAGGAGUUGUCACUUGGCUAACGAAUGUUCAUUCGUUUAUUUAUGGAUUGGACACUC .((((((((((((.((....(((((.(((((((((((.......)))))))))))...)))))...((((....)))).)).(((((((....))))))).......))))))))).))) (-30.67 = -33.15 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:17 2006