Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,834,444 – 11,834,537 |
Length | 93 |
Max. P | 0.786854 |
Location | 11,834,444 – 11,834,537 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -17.15 |
Consensus MFE | -11.11 |
Energy contribution | -12.98 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.00 |
Mean z-score | -2.54 |
Structure conservation index | 0.65 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11834444 93 + 27905053 GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC--------------------- ((((((...((((...(((((.((...(((....)))...))))))).....))))..)))))).........((((((((...)))))))).--------------------- ( -17.30) >DroSec_CAF1 14333 93 + 1 GUCGAAAUCUUUGUUAAGAUACCUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUUUCCCUCUAUGUAUACCAUAUACAUAC--------------------- ((((((((((..(...((((((((((.......)))))....)))))...)..)))).)))))).........((((((((...)))))))).--------------------- ( -18.50) >DroSim_CAF1 15832 93 + 1 GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC--------------------- ((((((...((((...(((((.((...(((....)))...))))))).....))))..)))))).........((((((((...)))))))).--------------------- ( -17.30) >DroEre_CAF1 18096 103 + 1 GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUGUAUGUAUUCCAUAUAC---CAUAUACAUAU--------UAG ((((((...((((...(((((.((...(((....)))...))))))).....))))..))))))........((((((((.........---...))))))))--------... ( -17.40) >DroYak_CAF1 18576 114 + 1 GUCCAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUACAUAUAUGUAUGUAUGUACACA (((..(((.((((...(((((.((...(((....)))...))))))).....)))).))).)))...........((((((..(((((((((....))))))))).)))))).. ( -19.40) >DroAna_CAF1 13193 79 + 1 GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUUCCGCUAUAUA----------------------------------- ((((((...((((...(((((.((...(((....)))...))))))).....))))..))))))...............----------------------------------- ( -13.00) >consensus GUCGAAAUCUCUGUUAAGAUACGUUAACUUAUCUAAGGCCACUAUCUAUUCUCAGAUAUUCGAUAUGUCCCUCUAUGUAUACCAUAUACAUAC_____________________ ((((((((((..(...(((((.((...(((....)))...)))))))...)..)))).)))))).........(((((((.....)))))))...................... (-11.11 = -12.98 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:16 2006