Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,819,729 – 11,819,824 |
Length | 95 |
Max. P | 0.896406 |
Location | 11,819,729 – 11,819,824 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 96.48 |
Mean single sequence MFE | -17.83 |
Consensus MFE | -15.53 |
Energy contribution | -15.87 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.81 |
Structure conservation index | 0.87 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11819729 95 - 27905053 CGGAACAGCAAAGCAACACGAAAAAAUAAAGCUCGUUAAAAAUGUUUUUUUUAGAAAACCAAAUCGAGAACAAAUCUCAUCGAGCAUCCUCUCUC .(((...((...))................(((((........((((((....))))))......((((.....))))..))))).)))...... ( -16.70) >DroSec_CAF1 23905 94 - 1 CGGAACAGCAAAGCAACAGAAAAAAAUAAAGCUCGUUAAAAUUGUUU-UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC .(((...((...))................(((((((......((((-((...))))))......((((.....))))))))))).)))...... ( -18.40) >DroSim_CAF1 24930 94 - 1 CGGAACAGCAAAGCAACACAAAAAAAUAAAGCUCGUUAAAAUUGUUU-UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC .(((...((...))................(((((((......((((-((...))))))......((((.....))))))))))).)))...... ( -18.40) >consensus CGGAACAGCAAAGCAACACAAAAAAAUAAAGCUCGUUAAAAUUGUUU_UUUUAGAAAACCAAAUCGAGAACAAAUCUCAGCGAGCAUCCUCUCUC .(((...((...))................(((((((......((((........))))......((((.....))))))))))).)))...... (-15.53 = -15.87 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:14 2006