Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,819,124 – 11,819,244 |
Length | 120 |
Max. P | 0.557104 |
Location | 11,819,124 – 11,819,244 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -20.42 |
Energy contribution | -20.75 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.99 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11819124 120 - 27905053 CGUCUCGUGUACAGCUUUAAAUAUUUCGAAAUAUUCGAUGCGAGCUCCACGCUCCCGCACUCGCCUACUCACUCUUUCUCUUUUUGUGGAUCCCUCUCUUUGGCUCCUCUCUUCCUUCGC ......((((...((.(..((((((....))))))..).))((((.....))))..))))..(((..........(((.(.....).)))...........)))................ ( -18.30) >DroSec_CAF1 23386 120 - 1 CGUCUCGUGUACAGCUUUUAAUAUUUCGAAAUAUUCGAUGCGAGCUCCACGCUCUCGCACUCGCCCACUCCUUCUUUCUCUUUUUGGGGAUCCCUCUCUUUGGCUCCUCUCUUCCUUCGC ......((((...((.((.((((((....)))))).)).))((((.....))))..))))..(((...........(((((....)))))...........)))................ ( -21.35) >DroSim_CAF1 24407 120 - 1 CGUCUCGUGUACAGCUUUAAAUAUUUCGAAAUAUUCGAUGCGAGCUCCACGCUCUCGCACUCGCCCACUCACUCUUUCUCUUUUUGGGGAUCCCUCUCUUUGGCUCCUCUCUUCCUUCGC ......((((...((.(..((((((....))))))..).))((((.....))))..))))..(((...........(((((....)))))...........)))................ ( -22.25) >consensus CGUCUCGUGUACAGCUUUAAAUAUUUCGAAAUAUUCGAUGCGAGCUCCACGCUCUCGCACUCGCCCACUCACUCUUUCUCUUUUUGGGGAUCCCUCUCUUUGGCUCCUCUCUUCCUUCGC ......((((...((.(..((((((....))))))..).))((((.....))))..))))..(((...........(((((....)))))...........)))................ (-20.42 = -20.75 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:11 2006