Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,818,011 – 11,818,131 |
Length | 120 |
Max. P | 0.760187 |
Location | 11,818,011 – 11,818,131 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -41.80 |
Consensus MFE | -37.61 |
Energy contribution | -37.83 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.07 |
Mean z-score | -2.09 |
Structure conservation index | 0.90 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11818011 120 - 27905053 UAGAAUUUCAGGACAAAUCUCGUGGCGCGACAAGUGAACGUGAGAAAAAUGAUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCAUUUGGCCCAUGCAAAUUCCCGAGACGUCGCGCCAA ......................(((((((((.......(....)........(((((((.....)))))))...(((((..(((((.......)))))......)).)))))))))))). ( -37.20) >DroSec_CAF1 22336 119 - 1 UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAA-AAUGCUGGGGAAAGACUUUCCUCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA .......................((((((((..(..(((((.(((.-..(.((((((((.....)))))))).).....))))))))..)..((((........))))..)))))))).. ( -42.40) >DroSim_CAF1 23327 120 - 1 UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAAAAAUGCUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA .......................((((((((..(..(((((.(((....(.((((((((.....)))))))).).....))))))))..)..((((........))))..)))))))).. ( -45.80) >consensus UAGAAUUUCAGGACAAAUCUCGCGGCGCGACAAGUGAACGUGAGAAAAAUGCUGGGGAAAGACUUUCCCCAGGAGUCCGUCUGCGUUUGCCCCUUGCAAAUUCCCGAGACGUCGCGCCAA .......................((((((((.......(....).......((((((((.....))))))))..(((((...(.((((((.....)))))).).)).))))))))))).. (-37.61 = -37.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:10 2006