Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,707,876 – 1,707,989 |
Length | 113 |
Max. P | 0.764677 |
Location | 1,707,876 – 1,707,989 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 83.38 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -16.34 |
Energy contribution | -16.23 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.05 |
Structure conservation index | 0.72 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764677 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1707876 113 + 27905053 CUGAGUUUUGUUAUGGUUUAUUUGAUAAACAGAAAUGGUAACCAGAUGGUAGCAAAAAAACUCGACAUAAAUCCUUUGUCAUUUCAGCACACAAAACAGUGUUGAAGCUUAAA ..((((((((((((.((((..(((.....((....)).)))..)))).))))))...))))))((((.........)))).(((((((((........)))))))))...... ( -27.10) >DroSec_CAF1 16810 90 + 1 ---------------------UUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA-AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA-AACAGUGUUGAAGCUUAAA ---------------------..............((((.(((....))).)))).-......((((.........)))).(((((((((...-....)))))))))...... ( -16.00) >DroSim_CAF1 18165 111 + 1 CUGAGUUUUGUUAUGGUUUAUUUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA-AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA-AACAGUGUUGAAGCUUAAA ..(((((((....(((((........)))))....((((.(((....))).)))))-))))))((((.........)))).(((((((((...-....)))))))))...... ( -24.70) >consensus CUGAGUUUUGUUAUGGUUUAUUUAAUAAUCAGAAAUUGUAACCAGAUGGUAGCAAA_AAACUCGGCAUAAAUCCUUUGUCAUUUUAGCACACA_AACAGUGUUGAAGCUUAAA ...................................((((.(((....))).))))........((((.........)))).(((((((((........)))))))))...... (-16.34 = -16.23 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006