Locus 4469

Sequence ID 3R_DroMel_CAF1
Location 11,817,612 – 11,817,731
Length 119
Max. P 0.692159
window7310

overview

Window 0

Location 11,817,612 – 11,817,731
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -29.83
Consensus MFE -28.60
Energy contribution -28.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.70
Structure conservation index 0.96
SVM decision value 0.33
SVM RNA-class probability 0.692159
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11817612 119 + 27905053
UCGUAUAUUUAAUAACGUACACUUAUGUGAUUUUAAUACCGACAAAGGUUAAGCGAUUUAUGUCUAUGUA-CGAGUGCGCAUGUCGCCUGUAUUCGGCGUUCUAUGCAGCAUUCAAAAUC
..((((((...(((((((.(((....)))........(((......)))...)))..))))....)))))-)(((((((((((.((((.......))))...))))).))))))...... ( -31.90)
>DroSec_CAF1 21942 120 + 1
UCGUAUAUUUAAUAACGUACACUUAUUUGAUUUUAAUACCGACAAAGGUUAAGCGAUUUAUGUCUAUGGAGCGAGUGCGCAUGUCGCCUUUAUUCGGCGUUCUAUGCAGCAUUCAAAAUC
..(((..((....))..)))........((((((....((((((.(((((....))))).))))...))...(((((((((((.((((.......))))...))))).)))))))))))) ( -28.80)
>DroSim_CAF1 22933 120 + 1
UCGUAUAUUUAAUAACGUACACUUAUUUGAUUUUAAUACCGACAAAGGUUAAGCGAUUUAUGUCUAUGGAGCGAGUGCGCAUGUCGCCUGUAUUCGGCGUUCUAUGCAGCAUUCAAAAUC
..(((..((....))..)))........((((((....((((((.(((((....))))).))))...))...(((((((((((.((((.......))))...))))).)))))))))))) ( -28.80)
>consensus
UCGUAUAUUUAAUAACGUACACUUAUUUGAUUUUAAUACCGACAAAGGUUAAGCGAUUUAUGUCUAUGGAGCGAGUGCGCAUGUCGCCUGUAUUCGGCGUUCUAUGCAGCAUUCAAAAUC
..(((..((....))..)))........((((((......((((.(((((....))))).))))........(((((((((((.((((.......))))...))))).)))))))))))) (-28.60 = -28.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:09 2006