Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,816,262 – 11,816,382 |
Length | 120 |
Max. P | 0.900951 |
Location | 11,816,262 – 11,816,382 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -33.45 |
Consensus MFE | -31.99 |
Energy contribution | -32.11 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.17 |
Structure conservation index | 0.96 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.900951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11816262 120 + 27905053 AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCUGGAUUUCGUGAGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA ..(((((....((((((((.....((((((....((((((....))))))...)))))).......))).....(((((.(((....))))))))..)))))..)))))........... ( -34.20) >DroSec_CAF1 20589 120 + 1 AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGAUUUCGUGUGUACGUGUGCGUUGCACUUUGGUCUCGUGGGAUAUACAAAUA ..(((((....(((((((......((((((....((((((....))))))...))))))........)).....(((((.(((....))))))))..)))))..)))))........... ( -32.94) >DroSim_CAF1 21604 120 + 1 AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGACUUCGUGUGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA ..((((......((((((((....))).......((((((....))))))..)))))........(((((((..(((...(((....)))..)))...)))))))))))........... ( -33.20) >consensus AACCCAUUUUCGGCCACCAUAAAUAUGUCAAAAUAGUUUGAAGCCAAACUUAGUGGCAUUAAACCCGGGAUUUCGUGUGUACGUGUGCGUUUCACUUUGGUCUCGUGGGAUAUACAAAUA ..(((((....(((((((......((((((....((((((....))))))...))))))........)).....(((((.(((....))))))))..)))))..)))))........... (-31.99 = -32.11 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:08 2006