Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,814,362 – 11,814,482 |
Length | 120 |
Max. P | 0.998004 |
Location | 11,814,362 – 11,814,482 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.16 |
Mean single sequence MFE | -33.91 |
Consensus MFE | -28.42 |
Energy contribution | -28.22 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.21 |
Mean z-score | -2.65 |
Structure conservation index | 0.84 |
SVM decision value | 2.98 |
SVM RNA-class probability | 0.998004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11814362 120 + 27905053 UUCCCGUGUCCUGAUUCAUUUGCCAUUCCUUUUUAUGAAUGGAUAUGCUCUAUUUUUGGGAUUGCUUCGGAUCGGUUUUUAAUGGGGGAAUUCCAUUUAUCUGAUUGGUAGUUUUCCGUA ....(((((((..((((((...............)))))))))))))...........(((..(((.(.((((((.....((((((.....))))))...)))))).).)))..)))... ( -29.86) >DroSec_CAF1 18721 120 + 1 UUCCCGUGUGCUGAUUCAUUUGCCAUUCCUUUUCAUGAAUGGAUGUGCUCUAUUUUUGGGAUGGCUUCGGAUCGGUUUUUAAUGGGGGAAUUCCAUUUAUCUGAUUGGUAGAUGUCCGUA ..(((((..((((((((....((((((((.......(((((((.....)))))))..))))))))...)))))))).....)))))(((....((((((((.....)))))))))))... ( -42.10) >DroSim_CAF1 19092 120 + 1 UUCCCGUGUGCUGAUUCAUUUGCCAUUCCUUUUUAUGAAUGGAUGUGCUCUAUUUUUGGGAUUGCCUCGGAUCGGUUUUUAAUGGGGGAAUUCCAUUUAUCUGAUUGGUAGAUGUCCGUA ..(((((..((((((((....((.(((((.......(((((((.....)))))))..))))).))...)))))))).....)))))(((....((((((((.....)))))))))))... ( -34.90) >DroEre_CAF1 19028 118 + 1 UUCCCGUGUGCUGAUUCAUUUGCCAUUCCUU-UCAUUAAUGGAUGUGCUCAUUUUUCUGGUAUGCUUAGGAUCGGUUUUUAAUGGGGGAAUUCCAU-UAUCUGAUUGGUAAAUGUCCGUA ........(((.((..(((((((((.((...-....(((((((..(.((((((...(((((.........))))).....)))))).)...)))))-))...)).))))))))))).))) ( -28.40) >DroYak_CAF1 19042 119 + 1 UUCCCGUGUGCUGAUUCAUUUGCCGAUCCUU-UUAUGAAUGGAUGUGCUCUAUUUUCUGAAAUGCUCAGGAUCGGUUUUUAAUGGGGGAAUUCCGUUUAUCUGAUUGGUAAAUGUCCGUA ........(((.((..((((((((((((...-..(((((((((..(.(((((((((((((.....)))))).........))))))).)..)))))))))..)))))))))))))).))) ( -34.30) >consensus UUCCCGUGUGCUGAUUCAUUUGCCAUUCCUUUUUAUGAAUGGAUGUGCUCUAUUUUUGGGAUUGCUUCGGAUCGGUUUUUAAUGGGGGAAUUCCAUUUAUCUGAUUGGUAGAUGUCCGUA ..(((((..((((((((.....((((((........))))))...............(((.....))))))))))).....)))))(((....((((((((.....)))))))))))... (-28.42 = -28.22 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:03 2006