Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,811,682 – 11,811,786 |
Length | 104 |
Max. P | 0.999803 |
Location | 11,811,682 – 11,811,786 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 99.23 |
Mean single sequence MFE | -40.80 |
Consensus MFE | -40.76 |
Energy contribution | -40.80 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.95 |
Structure conservation index | 1.00 |
SVM decision value | 4.12 |
SVM RNA-class probability | 0.999803 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11811682 104 - 27905053 CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50) >DroSec_CAF1 16049 104 - 1 CAGCAAAGUAACGAUUGAACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.((((.........))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -39.90) >DroSim_CAF1 16424 104 - 1 CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50) >DroEre_CAF1 16342 104 - 1 CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -41.50) >DroYak_CAF1 16340 104 - 1 CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGUGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). ( -39.60) >consensus CAGCAAAGUAACGAUUGUACUUAUUAUCGGCGACGCAACCGUCGAACUCAUUGCGCCGUGUACUCGGUACUUUGGCGUAGUUUGGCUGUCGCCGGUUCCGCUGA ((((.(((((.......)))))...((((((((((.....((((((((....((((((.((((...))))..))))))))))))))))))))))))...)))). (-40.76 = -40.80 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:57 2006