Locus 4459

Sequence ID 3R_DroMel_CAF1
Location 11,809,865 – 11,809,983
Length 118
Max. P 0.689935
window7286

overview

Window 6

Location 11,809,865 – 11,809,983
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.68
Mean single sequence MFE -34.08
Consensus MFE -25.00
Energy contribution -26.08
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.73
SVM decision value 0.33
SVM RNA-class probability 0.689935
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11809865 118 - 27905053
ACAGACUCCAUUACGAUCGGGUCGCGUUUAGCACCCCUCGUAGACAUAAAUAAUCUACUCCAUGGAUGGAUGGUGUGCCCAUGCC--AUAAUCCGCAGCCAUUUCAUCGUGACGAAGCAC
...(.((.(.(((((((.((((.((.....))))))...(((((.........))))).....((((..(((((((....)))))--)).))))...........))))))).).))).. ( -30.40)
>DroSec_CAF1 14181 116 - 1
ACAGUCUCCAUUACGAGCGGGUCGCGUUUAGCGCCCCUCGUAGACAUAAAUAAUCUACUCCAUGG----AUGGUGUGCCUAUGCCACAUAAUCCGCAGCCAUUUCAUCGUGACGGAGCAC
...(.((((.(((((((.(((.(((.....)))))))))(((((.........))))).....((----((.(((.((....)))))...))))..............)))).))))).. ( -37.20)
>DroSim_CAF1 14568 116 - 1
ACAGUCUCCAUUACGACCGGGUCGCGUUUAGCGCCCCUCGUAGACAUAAAUAAUCUACUCCACGG----AUGGUGUGCCUAUGCCACAUAAUCCGCAGCCAUUUCAUCGUGACGGAGCAC
...(.((((.((((((..(((.(((.....))).)))..(((((.........)))))....(((----((.(((.((....)))))...)))))...........)))))).))))).. ( -37.40)
>DroEre_CAF1 14443 113 - 1
ACAGACUCCAUUACGAUCGGGUCGCGUUUAGCGCCCCUCGUAGACAUAAAUAAUCUACUCCAUGG----AUG-CGUGCUUAUGCC--AUAAUCCGCAGCCAUUCCAUCGGAACGGAGCAC
...(.((((.((((((..(((.(((.....)))))).))))))...............(((((((----(.(-(.(((..((...--...))..)))))...))))).)))..))))).. ( -35.20)
>DroYak_CAF1 14450 109 - 1
ACAGACUCCAUUACGACCGGGUCGCGUUUAGCACCCCUCGUAGACACAAAUAAUCUACUCCAUGG----AUG-----CCUAUGCC--AUAAUCCGCAGCCAUUUCAUCGUGACGGAGCAG
...(.((((.((((((..((((.((.....))))))...(((((.........)))))...((((----.((-----(..((...--...))..))).))))....)))))).))))).. ( -30.20)
>consensus
ACAGACUCCAUUACGACCGGGUCGCGUUUAGCGCCCCUCGUAGACAUAAAUAAUCUACUCCAUGG____AUGGUGUGCCUAUGCC__AUAAUCCGCAGCCAUUUCAUCGUGACGGAGCAC
...(.((((.((((((..((((.((.....)))))).)))))).................(((((....(((((.(((..((........))..))))))))....)))))..))))).. (-25.00 = -26.08 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:46 2006