Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,807,719 – 11,807,839 |
Length | 120 |
Max. P | 0.648676 |
Location | 11,807,719 – 11,807,839 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.22 |
Mean single sequence MFE | -42.45 |
Consensus MFE | -28.64 |
Energy contribution | -28.25 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.32 |
Mean z-score | -1.44 |
Structure conservation index | 0.67 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11807719 120 + 27905053 GUUUGACUUUUUAAUGCCCGGCUUCCUUGGCACUGAGAAGCAGUUCGUGCAACGCUUUUCACGUCCCAUUCUGUCAUCUCGGGAUGCAAAGAGCUCUGCCAAGGAGCAGGAAGCUGGAGU ...............(((((((((((((((.((((((((((.(((.....))))))))))).)).))).(((..((((....))))...)))(((((.....))))))))))))))).)) ( -43.70) >DroPse_CAF1 13178 120 + 1 CUUCGACUUCCUAAUGCCGGGCUUUCUGGGCACCGAGAAGCAGUUUAUCCAACGCUUCUCACGGCCCAUUUUGGCAUCGCGCGAUGCCAAGAGUUCACCCAAAGAGCAGGAGGCCGGUGU .............(((((((.((((((((((...(((((((.(((.....))))))))))...)))).((((((((((....))))))))))((((.......))))))))))))))))) ( -52.60) >DroGri_CAF1 16689 120 + 1 GUUUGAUUUCCUAAUGCCUGGCUUCCUCGGCACCGAGAAGCAGUUCAUUCAACGCUAUUCCCGUCCUAUUCUAGCGUCGCGCGACGGCAAAACCUCACCCAAGGAGCAGGAGGCCGGUGU .............(((((.((((((((..((.(((((.(((.(((.....)))))).)))(((((........(((...))))))))...............)).))))))))))))))) ( -33.30) >DroWil_CAF1 14088 120 + 1 GUUCGAUUUCUUAAUGCCGGGAUUUCUGGGCACAGAGAAGCAAUUCAUUCAACGUUUCUCCCGUCCCAUUUUGGCAUCGCGGGAUGCUAAGAGUUCACCCAAAGAUCAGGAAGCUGGCGU .............(((((((..((((((((.((.(((((((............)))))))..)).)).((((((((((....))))))))))..............)))))).))))))) ( -37.50) >DroMoj_CAF1 15349 120 + 1 GUUUGAUUUCCUAAUGCCUGGCUUUCUGGGCACUGAGAAACAGUUUAUCCAACGGUACUCUCGGCCCAUAUUGGCCUCACGCGAUGGCAAAAGCUCGGCCAAGGAGCAGGAAGCUGGCGU .............(((((.((((((((((((...((((.((.(((.....))).))..)))).))))...((((((((....)).(((....))).)))))).....))))))))))))) ( -39.10) >DroAna_CAF1 11695 120 + 1 GUUCGACUUCCUGAUGCCGGGCUUCCUCGGAACUGAGAAGCAGUUCGUUCAGCGCUUCUCACGGCCAAUCUUAGCUUCGCGCGACGCCAAGAGCUCUGCCAAGGAGCAGGAGGCCGGCGU .............(((((((.((((((.((...((((((((.(((.....)))))))))))...))..((((.((.((....)).)).))))(((((.....)))))))))))))))))) ( -48.50) >consensus GUUCGACUUCCUAAUGCCGGGCUUCCUGGGCACUGAGAAGCAGUUCAUUCAACGCUUCUCACGGCCCAUUUUGGCAUCGCGCGAUGCCAAGAGCUCACCCAAGGAGCAGGAAGCCGGCGU .............(((((.((((((((.((....(((((((.(((.....))))))))))....)).......(((((....)))).)....((((.......))))))))))))))))) (-28.64 = -28.25 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:45 2006