Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,802,224 – 11,802,333 |
Length | 109 |
Max. P | 0.628452 |
Location | 11,802,224 – 11,802,333 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.66 |
Mean single sequence MFE | -35.82 |
Consensus MFE | -28.09 |
Energy contribution | -29.01 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.78 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11802224 109 - 27905053 AGCCUUUCCCACCGCAAUCCAAUCGACCAAUAAAGACUGGACACGUGGUCGAGGAAGGCAAAAGACAUGGACGACCUAGUCGGUACUGGUAUGGAUUUCCUGGGAGGCA .(((..(((((....((((((....((((.((..((((((...(((.(((.............)))....)))..))))))..)).)))).))))))...)))))))). ( -35.12) >DroSec_CAF1 6504 109 - 1 AGCCUUUCCCACCGCAAUCCAAUCGACCAAUAAAGACUGGACACGUGGCCGAGGAAGGCUAAAGACAUGGACGACCGAGUCGGUAAUGGUAUGGAUUUCCUGGGAGGCA .(((..(((((....((((((....((((.((..((((.......(((((......)))))......(((....)))))))..)).)))).))))))...)))))))). ( -36.50) >DroSim_CAF1 6646 109 - 1 AGCCUUUCCCACCGCAAUCCAAUCGACCAAUAAAGACUGGACACGUGGCCGAGGAAGGCUAAAGACAUGGACGACCGAGUCGGUGCUGGUAUGGAUUUCCUGGGAGGCA .(((..((((.((((..((((.((..........)).))))...))))...((((((.(((.((.(((.(((......))).)))))....))).))))))))))))). ( -36.60) >DroEre_CAF1 6556 109 - 1 UGCCUUUCCCACCGCAAUCCAAUCGACCAAUAAAGACUGGACACGUGGUCGAGGAAAGCAAAAGACAUGGACUAUCGAGUCGGUGCUGGGUUGGAUUUCCUGGGGAGCA .((..((((((((((..((((.((..........)).))))...)))))..((((((.(((.((.(((.((((....)))).)))))...)))..))))))))))))). ( -36.40) >DroYak_CAF1 6583 109 - 1 AGGCUUUUCCACCGCAAUCCAAUCGACCAAUAAAUACUGGACACGUGGUCGAGAAAGGCAAAAGACAUGGACUACCGAGUCGGUGCUGGUUUGGAUUUCCUGGGAAGCA ..(((((.(((....((((((((((((((................)))))))....((((...(((.(((....))).)))..))))...)))))))...)))))))). ( -34.49) >consensus AGCCUUUCCCACCGCAAUCCAAUCGACCAAUAAAGACUGGACACGUGGUCGAGGAAGGCAAAAGACAUGGACGACCGAGUCGGUGCUGGUAUGGAUUUCCUGGGAGGCA .(((..(((((((((..(((..(((((((................))))))))))..))....(((.(((....))).))))))........((....)).))))))). (-28.09 = -29.01 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:44 2006