Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,794,174 – 11,794,272 |
Length | 98 |
Max. P | 0.939793 |
Location | 11,794,174 – 11,794,272 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.12 |
Mean single sequence MFE | -37.23 |
Consensus MFE | -15.70 |
Energy contribution | -18.15 |
Covariance contribution | 2.45 |
Combinations/Pair | 1.19 |
Mean z-score | -2.19 |
Structure conservation index | 0.42 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11794174 98 + 27905053 GCCGAUCCCGGCGGUGCGU---UGGCAUCUGACACUGGACCGCUGCUUGGUGGUGUAGUAUCUA--UGGCGGGAGUUGGAUGU--C----UAAGUAUUAUAGUUUAUGA ((((....))))(((((..---.((((((..((((((.((((((....)))))).)))).(((.--.....)))))..)))))--)----...)))))........... ( -38.10) >DroPse_CAF1 150535 93 + 1 ACCGGUCCCCCCGGUGCACUUGGGGCUUCGGCAACAGGUGCACUGAUUGGCGGUGUGGUAUCUAGAUGACCAGAG----------------AAGUUCAUUAAUCUUUCC ((((..((((.(((((((((((..((....))..)))))))))))...)).))..)))).....(((((.(....----------------..).)))))......... ( -36.00) >DroSec_CAF1 126911 98 + 1 GCCGAUCCCGGCGGUGCGU---UGGUAUCUGGCACUGGACCGCUGCUUGGCGGUGUGGUAUCUA--UGGCGGGAGUUAGAUGU--C----UAAGUACCAUAGUUUAUGA ((((....))))(((((.(---(((((((((((((((.((((((....)))))).)))).(((.--.....))))))))))).--)----))))))))........... ( -40.30) >DroSim_CAF1 128520 98 + 1 GCCGAUCCCGGCGGUGCGU---UGGCAUCUGGCACUGGACCGCUGCUUGGCGGUGUGGUAUCUA--UGGCGGGAGUUAGAUGU--C----UAAGUACCAUAGUUUAUGA ((((....))))(((((..---.((((((((((((((.((((((....)))))).)))).(((.--.....))))))))))))--)----...)))))........... ( -44.20) >DroYak_CAF1 131519 104 + 1 GCCGAUCCCGGCGGUGCGU---UGGCAUCUGCAACUGGGCCGCUACUCGGCGGUGUGGUAUCUA--UGACGGAAGUGAAAUAUAUUGGAGUAAGUACAAUAGUUUAUGA ((((....))))(((((..---..)))))....((((.((((((....)))))).)))).....--(.((....)).)....(((((.........)))))........ ( -30.70) >DroPer_CAF1 147615 93 + 1 ACCGGUCCCCCCGGUGCACUUGGGGCCUCGGCAACAGGUGCACUGAUUGGCGGUGUGGUAUCUAGAUGACCAGAG----------------AAGUUCAUUAAUCUUUCC ((((..((((.(((((((((((..((....))..)))))))))))...)).))..)))).....(((((.(....----------------..).)))))......... ( -34.10) >consensus GCCGAUCCCGGCGGUGCGU___UGGCAUCUGCAACUGGACCGCUGCUUGGCGGUGUGGUAUCUA__UGACGGGAGUUAGAUGU__C____UAAGUACAAUAGUUUAUGA .....(((((.((((((.......)))))....((((.((((((....)))))).))))........).)))))................................... (-15.70 = -18.15 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:41 2006