Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,785,238 – 11,785,351 |
Length | 113 |
Max. P | 0.584093 |
Location | 11,785,238 – 11,785,351 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -18.48 |
Energy contribution | -18.23 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.27 |
Structure conservation index | 0.90 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11785238 113 + 27905053 GCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUU--UAUAACUAUCUUUACUUUAUC--UUUC-UU-UCCAUUC (((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-........--.....................--....-..-....... ( -20.60) >DroVir_CAF1 148682 104 + 1 GCUGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUU--UAUAAC---------UUAACG--UUUC-UU-UCCAUUC ((..(((((...(((((.((..(((((...((((........))))..))))).)).))))))))))..))-..(((((.--....))---------)))...--....-..-....... ( -19.70) >DroPse_CAF1 141543 114 + 1 GCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUU--UAUAACUAUCUUUAACUUAUC--UUUC-UUUUCCAUUC (((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-..((((((--.............))))))..--....-.......... ( -22.22) >DroGri_CAF1 150827 104 + 1 GCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGAU-UCUAAGUU--UAUAAC---------UUAACG--UUUC-UU-UCCUUUC ..(((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))..-..(((((.--....))---------)))...--....-..-....... ( -15.70) >DroWil_CAF1 96721 119 + 1 GCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGCCUCUAAGUUUUUAUAACAAUCUAUACUUUAUUCUUUUCUUU-UCCAUUC (((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))......(((.....)))........................-....... ( -20.40) >DroMoj_CAF1 159349 104 + 1 GCCGACUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC-UCUAAGUU--UAUAAC---------UUAACG--UUUC-UU-UCCAUUC (((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))-..(((((.--....))---------)))...--....-..-....... ( -24.50) >consensus GCCGAUUUAAUUGAGGAUACCGAUGAUUUAAAGUAAUUAAGAGCUUAUAUCGUAGUUUCUUCUAAGUUGGC_UCUAAGUU__UAUAAC_________UUAACG__UUUC_UU_UCCAUUC (((((((((...(((((.((..(((((...((((........))))..))))).)).))))))))))))))................................................. (-18.48 = -18.23 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:40 2006