Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,778,527 – 11,778,637 |
Length | 110 |
Max. P | 0.708842 |
Location | 11,778,527 – 11,778,637 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 90.48 |
Mean single sequence MFE | -15.19 |
Consensus MFE | -10.04 |
Energy contribution | -11.00 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.07 |
Mean z-score | -3.26 |
Structure conservation index | 0.66 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708842 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11778527 110 + 27905053 AUAACAUAAAAAUCAAAAACUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUCCAUUUGAUCAAACCAUUUGAUCAAACCACUGAAUAGAUUUC .........(((((.......(((((...........)))))((((((....(((((((((......((.....)).......))))))))).....)))))).))))). ( -15.12) >DroSec_CAF1 111420 110 + 1 AUAACAUAAAAAUCAAAACCUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUCCAUUUGAUCAAACCAUUUGAUCAAACAACUGAAUAGAUUUC .........(((((.......(((((...........)))))((((((....(((((((((......((.....)).......))))))))).....)))))).))))). ( -15.12) >DroSim_CAF1 113228 110 + 1 AUAACAUAAAAAUCAAAACCUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUCCAUUUGAUCAAACCAUUUGAUCAAACAACUGAAUAGAUUUC .........(((((.......(((((...........)))))((((((....(((((((((......((.....)).......))))))))).....)))))).))))). ( -15.12) >DroEre_CAF1 112237 102 + 1 AUAACAAAAAAAUCAAAAACUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUCCAUUUGAC--------UAGGUCAAACCACUGAAUCGUUUUC ...............(((((.(((((...........)))))((((((....(((((.(((.(((.......)))))--------).))))).....)))))).))))). ( -14.50) >DroYak_CAF1 115845 102 + 1 AUAACAUACAAGUCAAAAACUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUUCAUUUGAC--------UAGGUCAAACCACUGAAUAGUUUUC ...............(((((((((((...........)))))((((((....(((((.(((.(((.......)))))--------).))))).....)))))))))))). ( -16.10) >consensus AUAACAUAAAAAUCAAAAACUGAAAUUACCAUAACUCAUUUCAUUCAGCUCAUGAUCAAGUACAAUUUCCAUUUGAUCAAACCAUUUGAUCAAACCACUGAAUAGAUUUC .........(((((.......(((((...........)))))((((((....((........)).......(((((((((.....)))))))))...)))))).))))). (-10.04 = -11.00 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:36 2006