Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,701,210 – 1,701,304 |
Length | 94 |
Max. P | 0.849310 |
Location | 1,701,210 – 1,701,304 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -28.94 |
Consensus MFE | -17.70 |
Energy contribution | -18.32 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.13 |
Mean z-score | -2.04 |
Structure conservation index | 0.61 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1701210 94 - 27905053 --GGGUGUUGGUCGUACAAUAUUUACACUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGACUUUUAUGCGGCCAACAGCAGCAAGGACCAAGGAAC---- --(..(.(((((((((.......))).(((((((..-....((((((....(((.......)))...))))))..)))))))....)))))).)..)---- ( -31.00) >DroPse_CAF1 8576 88 - 1 ACUGGUGUUGGCGCUACAAUAUUUACACUGCUCUGCCGAAAGCCGCAAACUAAAGACUUGACUUUCAUGCGGCCAGUUUCCA----GAGCAG--------- ...(((((((......)))))))....((((((((..((((((((((....((((......))))..))))))...))))))----))))))--------- ( -28.40) >DroSec_CAF1 10371 97 - 1 --GGGUGUUGGUCGUACAAUAUUUACAGUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGACUUUUAUGCGGCCAGCAGCAGCAAGGUCCAAGGACC-AAG --((((((((......))))))))....((((((((-....((((((....(((.......)))...))))))..))).))))).((((....))))-... ( -35.00) >DroEre_CAF1 11226 97 - 1 --GGGUGUUGGUCGUACAAUAUUUACAUUGCUGUGC-GAAAGCCGCAAACUAAGGACUUGGCUUUUAUGCGGCCAGCAGCAACAAGGAGCAGGGAAC-AAG --.(.(((((((((((...........((((.(.((-....))))))).((((....))))......))))))))))).)...........(....)-... ( -27.70) >DroAna_CAF1 8548 98 - 1 --GGGUGUUGGCGCUACAAUAUUUACAGUGCUCUGC-GAAAGCCGCAAACUAAAGACUUGACUUUUAUGCGGCCAGGAGCAACAAGAAAACAACAACAAAC --(..((((((((((...........)))))..(((-....((((((....((((......))))..)))))).....)))............)))))..) ( -24.50) >DroPer_CAF1 8903 88 - 1 ACUGGUGUUGGCGCUACAAUAUUUACAGUGCUCUGCCGAAAGCCGCAAACUAAAGACUUGACUUUCAUGCGGCCAGUAUCCA----GAGCAG--------- ((((((((((......))))))...))))((((((......((((((....((((......))))..)))))).......))----))))..--------- ( -27.02) >consensus __GGGUGUUGGCCCUACAAUAUUUACAGUGCUCUGC_GAAAGCCGCAAACUAAAGACUUGACUUUUAUGCGGCCAGCAGCAACAAGGAGCAAGGAAC____ ..((((((((......)))))))).....(((((.......((((((....((((......))))..))))))..)))))..................... (-17.70 = -18.32 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:21 2006