Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,771,375 – 11,771,471 |
Length | 96 |
Max. P | 0.775703 |
Location | 11,771,375 – 11,771,471 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 72.34 |
Mean single sequence MFE | -30.05 |
Consensus MFE | -10.08 |
Energy contribution | -12.00 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.10 |
Mean z-score | -2.16 |
Structure conservation index | 0.34 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11771375 96 + 27905053 GCCCCCUGG-----GCUUUUGGCCAU-------CAUACACACUCACUCGCCAUUCAGUUUUUUGAUUGAGCGGCAGAGAACCAUCGCGAUUCAGGAGCCAAAGCCCUU .......((-----(((((.(((...-------............((((((.(((((((....))))))).))).)))..((...........)).)))))))))).. ( -30.20) >DroSec_CAF1 104169 96 + 1 GCCCCCUGG-----GCUUUCGGCCAU-------CAUACACACUCACGCGCCAUUCAGUUUUUUGAUUGAGCGGCAGCGGACCAUCGCAAUUCAGGAGCCAAAGCCCUU .......((-----(((((.(((...-------.........((.((((((.(((((((....))))))).))).)))))((...........)).)))))))))).. ( -31.90) >DroSim_CAF1 105853 96 + 1 GCCUCCUGG-----GCUUUUGGCCAU-------CAUACACACUCACGCGCCAUUCAGUUUUUUGAUUGAGCGGCAGCGGACCAUCGCAAUUCAGGAGCCAAAGCCCUU .......((-----(((((.(((...-------.........((.((((((.(((((((....))))))).))).)))))((...........)).)))))))))).. ( -31.90) >DroEre_CAF1 105224 86 + 1 GCCCCCUGG-----GCUUUUGG---------------CACACUCACUUGCCAUUAAGUUUUUUGAUUGAGCGGCAG--GACCUUUGCAAUUCAGGAGCCAAAGCCCUU .......((-----(((((.((---------------(.......((((((....((((....))))....)))))--).(((.........))).)))))))))).. ( -27.80) >DroYak_CAF1 108581 86 + 1 GCCCCCUGG-----GCUUUUGG---------------CACACGCACUCGCCAUUCAGUUUUUUGAUUGAGCGGCAA--GACCUUCGCAAUUCAGGAGCCAAAGCCCCU .......((-----(((((.((---------------(.......((.(((.(((((((....))))))).))).)--).(((.........))).)))))))))).. ( -29.50) >DroAna_CAF1 107002 96 + 1 GCAACCUGAAGGUGCCCUAAAGCCACGCAGACACAUAAAUACACAUAC-CCGUUACGGGCCUUGAUUGAGUGAGAG--GACC---------CAGUGGCAGGGCCCCAA ..........((.(((((...(((((...(((................-..)))..(((((((..........)))--).))---------).)))))))))).)).. ( -28.97) >consensus GCCCCCUGG_____GCUUUUGGCCAU_______CAUACACACUCACUCGCCAUUCAGUUUUUUGAUUGAGCGGCAG__GACCAUCGCAAUUCAGGAGCCAAAGCCCUU ..............(((((.(((.........................(((.(((((((....))))))).)))......((...........)).)))))))).... (-10.08 = -12.00 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:35 2006