Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,761,296 – 11,761,394 |
Length | 98 |
Max. P | 0.970855 |
Location | 11,761,296 – 11,761,394 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -18.72 |
Energy contribution | -18.76 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.03 |
Structure conservation index | 0.84 |
SVM decision value | 1.67 |
SVM RNA-class probability | 0.970855 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11761296 98 - 27905053 ACACGCCACGCUCGAGUUUCUUUUCUUUUUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU ....((...(((((((((.((((.....(((.((..(((((..--...)))))..)).)))..)))).)))-)))))).))((((((.......))).))) ( -22.90) >DroSec_CAF1 94144 97 - 1 ACACGCCACGCUCGAGUUUCUUUUCUU-UUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU ....((...(((((((((.((((....-(((.((..(((((..--...)))))..)).)))..)))).)))-)))))).))((((((.......))).))) ( -23.60) >DroSim_CAF1 95905 98 - 1 ACACGCCACGCUCGAGUUUCUUUUCUU-UUGGGUUUAUAGCUA--UUCGCUAUUUGCACAACUAAAGUAAUUUUGAGUCGCAGCCAAUUACCACUUGAGCU .........((((((((..........-(((.((..(((((..--...)))))..)).))).....(((((((((.....)))..)))))).)))))))). ( -21.60) >DroEre_CAF1 94599 97 - 1 ACACGCCACGCUCGAGUUUCUUUUGUU-UUUGGUUAAUAGUUU--UUCGCUAUUUUCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU ....((...(((((((((.((((.(((-..(((..((((((..--...)))))).))).))).)))).)))-)))))).))((((((.......))).))) ( -21.20) >DroYak_CAF1 98428 99 - 1 ACACGCCACGCUCGAGUUUCUUUUGUU-UUUAGUUUAUAGCUCUAUUCGCUAUUUGCACAACUAAAGUAAU-UUGAGUCGCAGCCAAUUACCACUUGAGCU ....((...(((((((((.((((.(((-....((..(((((.......)))))..))..))).)))).)))-)))))).))((((((.......))).))) ( -22.70) >consensus ACACGCCACGCUCGAGUUUCUUUUCUU_UUGGGUUUAUAGCUA__UUCGCUAUUUGCACAACUAAAGUAAU_UUGAGUCGCAGCCAAUUACCACUUGAGCU .........((((((((...............((..(((((.......)))))..)).........(((((.(((.....)))...))))).)))))))). (-18.72 = -18.76 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:34 2006