Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,759,093 – 11,759,232 |
Length | 139 |
Max. P | 0.986948 |
Location | 11,759,093 – 11,759,198 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.20 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -27.83 |
Energy contribution | -28.92 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.29 |
Mean z-score | -2.68 |
Structure conservation index | 0.68 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11759093 105 + 27905053 CUCCAUCAGUCGCACCUGCUCAUCCAAACUGCUCAAGGGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUGGUGCUUCUG ...(((((..(.((((((((((((((((..((.((..(((((((.((((.....))))...----))))))))).))..)))))..)))))))))))))))))...... ( -46.50) >DroSec_CAF1 91942 102 + 1 CUCCAUCAGUCGCACCUGCUCAUCCAAACUGCUCAAGGGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUUGUGC---UG ......((((((((((((((((((((((..((.((..(((((((.((((.....))))...----))))))))).))..)))))..)))))))))))..)).))---)) ( -45.10) >DroSim_CAF1 93702 102 + 1 CUCCAUCAGUCGCACCUGCUCAUCCAAACUGCUCAAGGGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUUGUGC---UG ......((((((((((((((((((((((..((.((..(((((((.((((.....))))...----))))))))).))..)))))..)))))))))))..)).))---)) ( -45.10) >DroEre_CAF1 92356 105 + 1 CUCCAUCAGACGCACCUGCUCCUCCAAGGUGCUCAUGGGCAGCUUUCGUAUUAUGCGACGC----AGUUGCUUUUUCUUCUUGGGCGAGAGGAGGUGCUUGUGCUUCUG ......((((.((((..((.(((((....((((((.((((((((.((((.....))))...----))))))))........))))))...))))).))..)))).)))) ( -41.80) >DroYak_CAF1 96191 105 + 1 UUCCAUUAGACGCACCUGCUCCUCCAAGGUGCUCAUGGGCAGCUUUCCUAUUAUGCGGCGC----AGUUGCUUGUGCUUUUUGGGCGAGAGUAGGUGCUUGUUCUUCCU ...........((((((((((((((((((....((..(((((((..((........))...----)))))))..))..))))))).).))))))))))........... ( -39.80) >DroPer_CAF1 99130 105 + 1 CUCCAUUAUUCUCACACGCUCCUCCAGCGAGUGGACGGGCAUCUUC----UUCUGUAGUGCCGUUAGUUGCUGCCUCUUUUUUGGUGUCAGCGAAUGCUUUGUGCGCUC .................(((.....)))(((((.(((((((.((.(----....).))))))((...((((((.(.((.....)).).))))))..))..))).))))) ( -27.10) >consensus CUCCAUCAGUCGCACCUGCUCAUCCAAACUGCUCAAGGGCAGCUUUCGCAUUAUGCGGCGC____AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGCUUGUGCUUCUG ............(((((((((.((((((..((....((((((((..(((........))).....))))))))..))..))))))...)))))))))............ (-27.83 = -28.92 + 1.09)
Location | 11,759,093 – 11,759,198 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.20 |
Mean single sequence MFE | -35.45 |
Consensus MFE | -19.87 |
Energy contribution | -21.57 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.22 |
Mean z-score | -2.09 |
Structure conservation index | 0.56 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11759093 105 - 27905053 CAGAAGCACCACCACCUGCUCACGCCCAAAAAGCGCAAGCAGCU----GCGCCGCAUAAUGCGAAAGCUGCCCUUGAGCAGUUUGGAUGAGCAGGUGCGACUGAUGGAG ........((((((((((((((...(((((..((.(((((((((----....(((.....)))..))))))..))).))..))))).)))))))))).).....))).. ( -42.50) >DroSec_CAF1 91942 102 - 1 CA---GCACAACCACCUGCUCACGCCCAAAAAGCGCAAGCAGCU----GCGCCGCAUAAUGCGAAAGCUGCCCUUGAGCAGUUUGGAUGAGCAGGUGCGACUGAUGGAG ((---(......((((((((((...(((((..((.(((((((((----....(((.....)))..))))))..))).))..))))).))))))))))...)))...... ( -41.90) >DroSim_CAF1 93702 102 - 1 CA---GCACAACCACCUGCUCACGCCCAAAAAGCGCAAGCAGCU----GCGCCGCAUAAUGCGAAAGCUGCCCUUGAGCAGUUUGGAUGAGCAGGUGCGACUGAUGGAG ((---(......((((((((((...(((((..((.(((((((((----....(((.....)))..))))))..))).))..))))).))))))))))...)))...... ( -41.90) >DroEre_CAF1 92356 105 - 1 CAGAAGCACAAGCACCUCCUCUCGCCCAAGAAGAAAAAGCAACU----GCGUCGCAUAAUACGAAAGCUGCCCAUGAGCACCUUGGAGGAGCAGGUGCGUCUGAUGGAG ((((.((((..((.(((((..(((........((....((....----)).))........)))(((.(((......))).)))))))).))..)))).))))...... ( -31.69) >DroYak_CAF1 96191 105 - 1 AGGAAGAACAAGCACCUACUCUCGCCCAAAAAGCACAAGCAACU----GCGCCGCAUAAUAGGAAAGCUGCCCAUGAGCACCUUGGAGGAGCAGGUGCGUCUAAUGGAA ....(((....((((((.(((.(..((((...((.((.(((.((----...((........))..)).)))...)).))...)))).)))).)))))).)))....... ( -29.50) >DroPer_CAF1 99130 105 - 1 GAGCGCACAAAGCAUUCGCUGACACCAAAAAAGAGGCAGCAACUAACGGCACUACAGAA----GAAGAUGCCCGUCCACUCGCUGGAGGAGCGUGUGAGAAUAAUGGAG (((.((.....)).)))((((.(..(......)..)))))..(((..((((((......----..)).))))..(((((.((((.....)))).))).))....))).. ( -25.20) >consensus CAGAAGCACAACCACCUGCUCACGCCCAAAAAGCGCAAGCAACU____GCGCCGCAUAAUGCGAAAGCUGCCCUUGAGCACUUUGGAGGAGCAGGUGCGACUGAUGGAG ............((((((((((...(((((..((.((.(((.((.....(((........)))..)).)))...)).))..))))).))))))))))............ (-19.87 = -21.57 + 1.70)
Location | 11,759,130 – 11,759,232 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -21.46 |
Energy contribution | -22.97 |
Covariance contribution | 1.51 |
Combinations/Pair | 1.38 |
Mean z-score | -1.60 |
Structure conservation index | 0.58 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11759130 102 + 27905053 GGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUGGUGCUUCUGAAAGCGCUCCACUCCGC--GGUGCAAGUUCUCCAUC ((.(((((..((((..(((((...----..(((((..((((.....))))..)))))((((.(((((((....))))))))))).))))--))))))))))..))... ( -45.80) >DroPse_CAF1 103339 100 + 1 GGCAUCUUC----UUCUGUAGUGCCGUUAGUUGCUGCCUCUUUUUUGGUGUCAACGUAUGCUUUGUGCGCUCAAGGCGAUCCAAUUCUUCUCGUAUAAGGUCUA---- ((((.((.(----....).))))))....((((.((((........)))).))))....((((((((((....(((.((......)).)))))))))))))...---- ( -24.90) >DroSec_CAF1 91979 99 + 1 GGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUUGUGC---UGAAAGCGCUCCACUCCGC--GGUGCAAGUUCUCCAUC ((.(((((..((((..(((((...----..(((((..((((.....))))..)))))((((..((((---.....)))).)))).))))--))))))))))..))... ( -43.30) >DroSim_CAF1 93739 99 + 1 GGCAGCUUUCGCAUUAUGCGGCGC----AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGGUUGUGC---UGAAAGCGCUCCACUCCGC--GGUGCAAGUUCUCCAUC ((.(((((..((((..(((((...----..(((((..((((.....))))..)))))((((..((((---.....)))).)))).))))--))))))))))..))... ( -43.30) >DroEre_CAF1 92393 102 + 1 GGCAGCUUUCGUAUUAUGCGACGC----AGUUGCUUUUUCUUCUUGGGCGAGAGGAGGUGCUUGUGCUUCUGAAAGCGCUCCACCCCGC--GGUGCAAGUUCUCCAUC (((((((.((((.....))))...----))))))).......((((.((..(.((.((((...((((((....))))))..)))))).)--.)).))))......... ( -32.80) >DroYak_CAF1 96228 102 + 1 GGCAGCUUUCCUAUUAUGCGGCGC----AGUUGCUUGUGCUUUUUGGGCGAGAGUAGGUGCUUGUUCUUCCUAAAGCGCUCCACUCUGC--GGUGCAAGUUUUCCAUC ((.((((.........((((.(((----((......(((((((..(((((((........))))))).....)))))))......))))--).))))))))..))... ( -31.20) >consensus GGCAGCUUUCGCAUUAUGCGGCGC____AGCUGCUUGCGCUUUUUGGGCGUGAGCAGGUGCUUGUGCUUCUGAAAGCGCUCCACUCCGC__GGUGCAAGUUCUCCAUC ((.(((((..((((...((((.........(((((((((((.....)))))))))))(((...(((((......)))))..))).))))...)))))))))..))... (-21.46 = -22.97 + 1.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:33 2006