Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,752,431 – 11,752,552 |
Length | 121 |
Max. P | 0.999729 |
Location | 11,752,431 – 11,752,528 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.92 |
Mean single sequence MFE | -13.44 |
Consensus MFE | -9.26 |
Energy contribution | -9.70 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.69 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511400 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11752431 97 + 27905053 GCUGGCAAGAAAUAUUUCCUAUAAUUUAAGCUCAUACUAUUAUAUAUUUAUUCUUGU--UUUUUUUUUCUUUGUAAAACUUGUCAGCGCCACCCACUUU (((((((((..........((((((.............))))))..(((((......--.............))))).)))))))))............ ( -14.03) >DroSec_CAF1 85180 88 + 1 GCUGCCAAGAAAUAUUUACUAUAAUUUAAGCUCAUACUCGUAUAUAUUUAUUCUUG-----------UUUUUGUAAAACUUGUCAGUGCCACCCACUUU ((((.((((((((((.(((....................))).)))))).......-----------(((....))).)))).))))............ ( -8.15) >DroSim_CAF1 86878 99 + 1 GCUGCCAAGAAAUAUUUACUAUAAUUUAAGCUCAUACUCGUAUAUAUUUAUUCUUGUAUUUUUCUUUUUUUUGUAAAACUUGUCAGCGCCACCCACUUU ((((.((((.....(((((...((...(((...((((..(.(((....))).)..))))....)))..))..))))).)))).))))............ ( -12.10) >DroEre_CAF1 85534 87 + 1 GCUGGCAAGAAAUAUUUCCUAUAAUUUUAGCUCAU------AUAUAUUUAUUCUUGU--UUCUC----UUUUGUAAAACUUGUCAGCGCCACCCACUUU (((((((((..((((...(((......)))...))------))...(((((....(.--....)----....))))).)))))))))............ ( -15.20) >DroYak_CAF1 89254 83 + 1 GCUGGCAAGAAGUAUUUCAUAUAAUUUUAGCGCAU------AUAUUGUUAUUCUUGU--U--------UUUUGUAAAACUUGUCAGCGCCACCCACUUU (((((((((...(((.....((((...(((((...------....)))))...))))--.--------....)))...)))))))))............ ( -17.70) >consensus GCUGGCAAGAAAUAUUUCCUAUAAUUUAAGCUCAUACU__UAUAUAUUUAUUCUUGU__UU_U____UUUUUGUAAAACUUGUCAGCGCCACCCACUUU (((((((((...(((.....))).......................(((((.....................))))).)))))))))............ ( -9.26 = -9.70 + 0.44)
Location | 11,752,452 – 11,752,552 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 83.91 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -23.02 |
Energy contribution | -24.10 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.05 |
Mean z-score | -3.85 |
Structure conservation index | 0.90 |
SVM decision value | 3.96 |
SVM RNA-class probability | 0.999729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11752452 100 - 27905053 GUGGAACUAGCCGGCGCUGCCUAGAAAGUGGGUGGCGCUGACAAGUUUUACAAAGAAAAAAAAA--ACAAGAAUAAAUAUAUAAUAGUAUGAGCUUAAAUUA ((((((((.(.((((((..((((.....))))..)))))).).)))))))).............--..(((.....((((......))))...)))...... ( -29.10) >DroSec_CAF1 85201 91 - 1 GUGGAACAAGCCGGCGCUGCCUAGAAAGUGGGUGGCACUGACAAGUUUUACAAAAA-----------CAAGAAUAAAUAUAUACGAGUAUGAGCUUAAAUUA (((((((..(.(((.((..((((.....))))..)).))).)..))))))).....-----------.................((((....))))...... ( -22.10) >DroSim_CAF1 86899 102 - 1 GCGGAACAAGCUGGCGCUGCCUAGAAAGUGGGUGGCGCUGACAAGUUUUACAAAAAAAAGAAAAAUACAAGAAUAAAUAUAUACGAGUAUGAGCUUAAAUUA (..((((..(..(((((..((((.....))))..)))))..)..))))..)......(((....((((..(.(((....))).)..))))...)))...... ( -24.70) >DroEre_CAF1 85555 89 - 1 GUGGAACUAGU-GGCGCUGCCUAGAAAGUGGGUGGCGCUGACAAGUUUUACAAAA----GAGAA--ACAAGAAUAAAUAUAU------AUGAGCUAAAAUUA ((((((((.((-(((((..((((.....))))..))))).)).))))))))....----.....--................------.............. ( -26.90) >DroYak_CAF1 89275 86 - 1 GUGGAAAUAGCCGGCGCUGCCUAGAAAGUGGGUGGCGCUGACAAGUUUUACAAAA--------A--ACAAGAAUAACAAUAU------AUGCGCUAAAAUUA .......((((((((((..((((.....))))..))))))....(((((....))--------)--))..............------....))))...... ( -25.10) >consensus GUGGAACUAGCCGGCGCUGCCUAGAAAGUGGGUGGCGCUGACAAGUUUUACAAAAA____A_AA__ACAAGAAUAAAUAUAUA__AGUAUGAGCUUAAAUUA ((((((((.(.((((((..((((.....))))..)))))).).))))))))................................................... (-23.02 = -24.10 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:30 2006