Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,751,816 – 11,751,948 |
Length | 132 |
Max. P | 0.939888 |
Location | 11,751,816 – 11,751,919 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 88.30 |
Mean single sequence MFE | -24.46 |
Consensus MFE | -17.91 |
Energy contribution | -18.43 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.13 |
Mean z-score | -2.47 |
Structure conservation index | 0.73 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11751816 103 - 27905053 AUCUUUUAUGUCACCAACUUUUGUUUUGAAGCUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAACAAACUCCAGUGUUUGCCUUA-UAUUGCCUAUGAUAACCA ........(((((.........(.(((((((((....))))...))))).)(((..((((((..(((((......)))))..)))-)))..))).))))).... ( -22.90) >DroSec_CAF1 84575 103 - 1 AACUUUUAUGCCAGCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAACAAACACCAGUGUUUGUCUUA-UAUUGCCUAUGAUAGCCA .............((.......((((((......))))))........((((((..(((((..(((((((....)))))))..))-)))..))..)))).)).. ( -27.60) >DroSim_CAF1 86273 103 - 1 AACUUUUAUGCCACCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAACAAACUCCAGUGUUUGUCUUA-UAUUGCCUAUGAUAGCCA .........((...........((((((......))))))........((((((..(((((..((((((......))))))..))-)))..))..)))).)).. ( -25.10) >DroEre_CAF1 84927 103 - 1 GACUUUUAUGCCACCAACAAUUGCCUUCAAGCUAGAGAGCUUUAUUAAAUCAGGUGGUAUACAACAAACGCAACUGUUUGUCCCA-UAUUGCCUAUGAUAACCA ......(((((((((....(((......(((((....))))).....)))..)))))))))..(((((((....)))))))..((-((.....))))....... ( -20.20) >DroYak_CAF1 88627 104 - 1 GACUUUUAUGCCACCAGCAAUUGUUUUCGAGCUAGAGAGCAAUAUUAAAUCAGGUGGCAUACAACAAACAUAACUGUUUGUCUAAUUAUUGCCUAUGAUAACCA ......(((((((((....(((((((((......))))))))).........)))))))))..(((((((....)))))))...(((((.....)))))..... ( -26.52) >consensus AACUUUUAUGCCACCAACAAUUGUUUUCGAGCUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAACAAACACCAGUGUUUGUCUUA_UAUUGCCUAUGAUAACCA ...((((((((((((.......((((((......))))))............))))))))))))(((((......)))))........................ (-17.91 = -18.43 + 0.52)
Location | 11,751,855 – 11,751,948 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -16.69 |
Consensus MFE | -12.88 |
Energy contribution | -13.08 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.41 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | 1.28 |
SVM RNA-class probability | 0.939888 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11751855 93 - 27905053 GAAACUAAUAAGAAUAAGUAGCUAUUGACAUCUUUUAUGUCACCAACUUUUGUUUUGAAGCUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAA ...((((..........((((((..((((((.....))))))....((((.(((....))).))))))))))...........))))...... ( -14.80) >DroSec_CAF1 84614 93 - 1 GAAACUAACAAGAAUAAAAAGCUAUUGACAACUUUUAUGCCAGCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAA .................................(((((((((.(...(((.((((((......))))))...)))......).))))))))). ( -14.30) >DroSim_CAF1 86312 93 - 1 GAAACUAACAAGAAUAAAUAGCUAUUGACAACUUUUAUGCCACCAACAAUUGUUUUCGAACUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAA .................................(((((((((((...(((.((((((......))))))...)))......))))))))))). ( -18.80) >DroEre_CAF1 84966 93 - 1 GAUACUAACAAGAAUAAUUAGCUAUUGACGACUUUUAUGCCACCAACAAUUGCCUUCAAGCUAGAGAGCUUUAUUAAAUCAGGUGGUAUACAA ((((((((.........)))).)))).........(((((((((....(((......(((((....))))).....)))..)))))))))... ( -15.70) >DroYak_CAF1 88667 93 - 1 GAAACUAAAAACAAUAAAUAGCUAUCGACGACUUUUAUGCCACCAGCAAUUGUUUUCGAGCUAGAGAGCAAUAUUAAAUCAGGUGGCAUACAA ...................................(((((((((....(((((((((......))))))))).........)))))))))... ( -21.32) >DroAna_CAF1 85254 71 - 1 GAAAUUAACUUUUAAAAAUUUCGUUACAGGGCUUUUAUACCACUGAA----------------------UUUAUUAAAUCAGGUGGUGUAAAA ((((((..........))))))...........(((((((((((..(----------------------((.....)))..))))))))))). ( -15.20) >consensus GAAACUAACAAGAAUAAAUAGCUAUUGACAACUUUUAUGCCACCAACAAUUGUUUUCGAGCUAGAGAGCUAUAUUAAAUCAGGUGGUAUAGAA .................................(((((((((((.......((((((......))))))............))))))))))). (-12.88 = -13.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:27 2006