Locus 4443

Sequence ID 3R_DroMel_CAF1
Location 11,745,110 – 11,745,212
Length 102
Max. P 0.508555
window7264

overview

Window 4

Location 11,745,110 – 11,745,212
Length 102
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 81.47
Mean single sequence MFE -26.40
Consensus MFE -15.59
Energy contribution -15.82
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.79
Structure conservation index 0.59
SVM decision value -0.05
SVM RNA-class probability 0.508555
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 11745110 102 + 27905053
AAACCAUGUCCAGUCCC-AAU-CCAAGUUGGAAGCCCUCGGGGCGCUCUCAGCA-AUUUUCAUUGC---------UCCAGCCUUAGCUCCGGCAACAGCAACUUCGACAGCUAC
......((((.(((.((-(((-....)))))..(((...((((((((...((((-((....)))))---------)..)))....)))))))).......)))..))))..... ( -25.90)
>DroPse_CAF1 86726 101 + 1
-AACCAUGUCCAGUCCCCAAUCCCAAGCUGGAAGCCCUCGGGGCGCUCUCAGCA-AUUUUCAUUGCUGCCGUUGCUCCAGCUCCAGCUCCAGCUCCAGCAC-UU----------
-.........................((((((.((....((((((....(((((-((....)))))))....))))))(((....)))...))))))))..-..---------- ( -31.70)
>DroSim_CAF1 79627 102 + 1
CAACCAUGUCCAGUCCC-AAU-CCAAGUUGGAAGCCCUCGGGGCGCUCUCAGCA-AUUUUCAUUGC---------UCCAGCCUUAGCUCCGGCAACAGCAACAUCGAACGCUAC
...............((-(((-....))))).(((...(((((((((...((((-((....)))))---------)..)))....))))))((....))..........))).. ( -23.60)
>DroEre_CAF1 78311 102 + 1
CAACCAUGUCCAGUCCC-AAU-CCAAGUUGGAAGCCCUCGGGGCGCUCUCAGCA-AUUUUCAUUGC---------UCCAGCUUUAGCUCCGGCCACUGCGACUUCGACAGCUAC
......((((.((((((-(((-....)))))..((..((((((((((...((((-((....)))))---------)..)))....))))))).....))))))..))))..... ( -28.90)
>DroYak_CAF1 81926 102 + 1
AAACCAUGUCCAGUCCC-AAU-CCAAGUUGGAAGCCCUCGGGGCGCUCUCAGCA-AUUUUCAUUGC---------UCCAGCUUUAGCUCUGGCAACAGCAACUUCGACAUUUAC
.....(((((.(((...-...-..((((((((.((((...)))).......(((-((....)))))---------)))))))).....(((....)))..)))..))))).... ( -27.80)
>DroAna_CAF1 77633 90 + 1
-AACCAUGUCCAGUCCC-AAU-CCAAGUGGGAAGCCCUCGGGGCGCUCUCAGCAAAUUUUCAUUGC---------UCCAUCUAC------AGCAACAGC------UCCAGCUCC
-............((((-(..-.....)))))(((....(((((((.....)).........((((---------(........------)))))..))------))).))).. ( -20.50)
>consensus
_AACCAUGUCCAGUCCC_AAU_CCAAGUUGGAAGCCCUCGGGGCGCUCUCAGCA_AUUUUCAUUGC_________UCCAGCUUUAGCUCCGGCAACAGCAACUUCGACAGCUAC
..........................((((((.((((...))))((.....))......................))))))..........((....))............... (-15.59 = -15.82 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:25 2006