| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,691,918 – 1,692,017 |
| Length | 99 |
| Max. P | 0.546780 |
| Location | 1,691,918 – 1,692,017 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 75.62 |
| Mean single sequence MFE | -41.45 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.38 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546780 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1691918 99 - 27905053 GCGCCCAGAAGAGUGCUCCAACUGGCGGUGACGCCUCGUCGCCGCUGGGAAAUCGGCCGAGUGGUUUGUUCGCUGGCGGAGGAGGAG------GCGGAGGAGGUG .(((((....(..(.((((..(..(((((((((...)))))))))..)....((.(((.(((((.....)))))))).)))))).).------.)....).)))) ( -45.60) >DroPse_CAF1 794 102 - 1 GUGCGCAAAAAAGCG---CAACUGGCAGUGACACAUCGUCGCCGCUGGGAAAUCGGCCGAGUGGUUUAUUUAUGGGCGGCGGCAGUGGAGGUGGAGGCAGUGCCG .(((((......)))---))...((((.((.(((.(((((((((((.(.((((..(((....)))..)))).).)))))))))....)).)))....)).)))). ( -45.00) >DroGri_CAF1 6940 96 - 1 GCGCACAGAAAAGCG---CAACUGGCAGUGACACAUCGUCACCGCUGGGAAAUCGACAGAGUGGUUUAUUUAUGGGCGGCAGCACAGC------GGCCGCGCCCA ((((........)))---)..(..((.(((((.....))))).))..).((((((......))))))......(((((((.((...))------.))))).)).. ( -35.60) >DroYak_CAF1 1104 102 - 1 GCGCCCAGAAGAGUGCUCCAAGUGGCGGUGACGCCUCGUCACCGUUGGGAAAUCGGCCGAGUGGUUUGUUCGUCGGCGGAGGAGUUG---GUGGUGGUGGUGCGG ((((((........(((((....((((((((((...))))))))))......((.(((((.(((.....)))))))).)))))))..---......).))))).. ( -44.09) >DroMoj_CAF1 5832 96 - 1 GUGCGCAAAAAAGCG---CAACUGGCAGUGACACAUCGUCGCCGUUGGGAAAUCGACAGAGUGGUUUAUUUAUGGGCGGCAGCAACGG------CGCCGCGCCCA .(((((......)))---)).(..((.(((((.....))))).))..).((((((......))))))......(((((((.((....)------)))))).)).. ( -35.20) >DroPer_CAF1 803 102 - 1 GUGCGCAAAAAAGCG---CAACUGGCAGUGACACAUCGUCGCCGCUGGGAAAUCGGCCGAGUGGUUUAUUUAUGGGCGGCGGCAGUGGAGGUGGAGGUAGUGCCG .(((((......)))---))...((((.((.(((.(((((((((((.(.((((..(((....)))..)))).).)))))))))....)).)))....)).)))). ( -43.20) >consensus GCGCGCAAAAAAGCG___CAACUGGCAGUGACACAUCGUCGCCGCUGGGAAAUCGGCCGAGUGGUUUAUUUAUGGGCGGCGGCAGUGG_____GAGGCGGUGCCG .(((.((..............(((((.(((((.....))))).))))).((((..((......))..)))).)).)))........................... (-17.52 = -17.38 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:20 2006