Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,707,879 – 11,707,969 |
Length | 90 |
Max. P | 0.796859 |
Location | 11,707,879 – 11,707,969 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -15.83 |
Consensus MFE | -8.94 |
Energy contribution | -9.83 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.56 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.796859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11707879 90 - 27905053 GUGCAGCG--------------AAAUGGCA-AAAAUCGUGACUGGGCGACCAGUAACAAAAAUCAAAUGAAA----UUCACUUCAGAAUUUGAAACAAUCAAACCAUUA ........--------------.(((((..-......((.(((((....))))).))..........(.(((----(((......)))))).)..........))))). ( -18.00) >DroPse_CAF1 49941 104 - 1 GCGAA---AAAUUGCUUGGCUAAAAUACCAGAAAAUCGUGACUGUAAAUCCAU-A-AAAAAAUCAACGCAUUUUCCUUCCUUUCAAUUUCUGAAACAAUCAAACCAUCA ((((.---...)))).(((...........(((((((((..............-.-.........))).)))))).....(((((.....)))))........)))... ( -9.66) >DroSec_CAF1 45204 90 - 1 GUGCAGCG--------------AAAUGGCA-AAAAUCGUGACUGGGCGACCAGUAACAAUAAUCAAAUGAAA----UUCACUUCAGAAUUUGAAACAAUCAAACCAUUA ........--------------.(((((..-......((.(((((....))))).))..........(.(((----(((......)))))).)..........))))). ( -18.00) >DroSim_CAF1 46856 90 - 1 GUGCAGCG--------------AAAUGGCA-AAAAUCGUGACUGGGCGACCAGUAACAAAAAUCAAAUGAAA----UUCACUUCAGAAUUUGAAACAAUCAAACCAUUA ........--------------.(((((..-......((.(((((....))))).))..........(.(((----(((......)))))).)..........))))). ( -18.00) >DroEre_CAF1 45164 82 - 1 GUGCAGCG--------------A---------GAAUCGUGACUGGGAGACCAGUAACAAUAAUCAAAUGAAA----UUCACUUCAAAAUUUGAAACAAUCAAACCAUUA .......(--------------(---------.....((.(((((....))))).)).....(((((((((.----.....))))...))))).....))......... ( -15.60) >DroYak_CAF1 45498 82 - 1 GUGCAGCG--------------A---------GAAUCGUGACUGGGAAACCAGUAACAAAAAUCAAAUGAAA----UUCACUUCAGAAUUUGAAACAAUCAAACCAUUA .......(--------------(---------.....((.(((((....))))).))..........(.(((----(((......)))))).).....))......... ( -15.70) >consensus GUGCAGCG______________AAAUGGCA_AAAAUCGUGACUGGGAGACCAGUAACAAAAAUCAAAUGAAA____UUCACUUCAGAAUUUGAAACAAUCAAACCAUUA .....................................((.(((((....))))).)).....((((((...................))))))................ ( -8.94 = -9.83 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:11 2006