Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,707,126 – 11,707,228 |
Length | 102 |
Max. P | 0.811058 |
Location | 11,707,126 – 11,707,228 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.54 |
Mean single sequence MFE | -36.27 |
Consensus MFE | -24.73 |
Energy contribution | -26.15 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.29 |
Mean z-score | -2.87 |
Structure conservation index | 0.68 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666132 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11707126 102 + 27905053 AGUUAAUGAGGUUUACAGUUUGCUCCUCGCUG----AAAUUGCGAACGGUUGCAUGCAGCU-------GGAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAAGUAAU ............((((..(.((((((((((..----.....)))).((((((....)))))-------)........(((((((.....)))))))..)))))).)..)))). ( -33.70) >DroPse_CAF1 49248 109 + 1 AGUUAAUGAGGUUUACAGUGCUCUCUCCUCAGCUCCAUGCUGCCGGCAGUUGCAUGUAGUUCUGUGUGGAUAAUUUUGUUGCCACAACACGACGGUCUGGAACUCAAAA---- ......((((...((((.(((...((((.((((.....))))..)).))..)))))))(((.(((((((.((((...)))))))).))).))).........))))...---- ( -27.90) >DroSec_CAF1 44474 102 + 1 AGUUAAUGAGGUUUACAGUGUGCUCCUCGCUG----AAAUUGCGAAAGGUUGCAUGCAGCU-------GGAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAAGUGAU ............((((..((((((((..((((----....(((((....)))))..)))).-------.........(((((((.....)))))))..))))))))..)))). ( -38.30) >DroSim_CAF1 46120 102 + 1 AGUUAAUGAGGUUUACAGUGUGCUCCUCGCUG----AAAUUGCGAACGGUUGCAUGCAGCU-------GGAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAUGUAAU ............(((((.((((((((((((..----.....)))).((((((....)))))-------)........(((((((.....)))))))..)))))))).))))). ( -40.90) >DroEre_CAF1 44423 102 + 1 AGUUAAUGAGGUUUACAGUGCGCUCCUCGCUG----AAAUUGUGAGCGGUUGCAUGCAGCU-------GGAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAAGUAAU ............((((..((.(((((((((..----.....)))).((((((....)))))-------)........(((((((.....)))))))..))))).))..)))). ( -33.60) >DroYak_CAF1 44714 102 + 1 AGUUAAUGAGGUUUACAGUGUGCUCCUCGCUG----AAAUUGCGAGCGGUUGCAUGCAGCU-------GCAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAAGUAAU ............((((..((((((((((((..----.....))))(((((((....)))))-------)).......(((((((.....)))))))..))))))))..)))). ( -43.20) >consensus AGUUAAUGAGGUUUACAGUGUGCUCCUCGCUG____AAAUUGCGAACGGUUGCAUGCAGCU_______GGAACUUUUGUUGCCACAACAUGGCAGCUCGGAGCACAAAGUAAU ............((((..((((((((..((((.....(((((....))))).....)))).................(((((((.....)))))))..))))))))..)))). (-24.73 = -26.15 + 1.42)
Location | 11,707,126 – 11,707,228 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 84.54 |
Mean single sequence MFE | -33.18 |
Consensus MFE | -23.70 |
Energy contribution | -24.73 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.25 |
Mean z-score | -3.18 |
Structure conservation index | 0.71 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11707126 102 - 27905053 AUUACUUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUCC-------AGCUGCAUGCAACCGUUCGCAAUUU----CAGCGAGGAGCAAACUGUAAACCUCAUUAACU .((((....((((((..(((((...((((..((.......))..)-------))).))).))......((((.....----..))))))))))....))))............ ( -30.00) >DroPse_CAF1 49248 109 - 1 ----UUUUGAGUUCCAGACCGUCGUGUUGUGGCAACAAAAUUAUCCACACAGAACUACAUGCAACUGCCGGCAGCAUGGAGCUGAGGAGAGAGCACUGUAAACCUCAUUAACU ----.....(((((((..(.(((((((.((((............))))))).........((....)))))).)..)))))))(((((.((....)).)...))))....... ( -24.00) >DroSec_CAF1 44474 102 - 1 AUCACUUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUCC-------AGCUGCAUGCAACCUUUCGCAAUUU----CAGCGAGGAGCACACUGUAAACCUCAUUAACU ...((..((((((((..(((((...((((..((.......))..)-------))).))).))......((((.....----..))))))))))))..)).............. ( -32.30) >DroSim_CAF1 46120 102 - 1 AUUACAUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUCC-------AGCUGCAUGCAACCGUUCGCAAUUU----CAGCGAGGAGCACACUGUAAACCUCAUUAACU .(((((.((((((((..(((((...((((..((.......))..)-------))).))).))......((((.....----..)))))))))))).)))))............ ( -35.90) >DroEre_CAF1 44423 102 - 1 AUUACUUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUCC-------AGCUGCAUGCAACCGCUCACAAUUU----CAGCGAGGAGCGCACUGUAAACCUCAUUAACU .((((..((((((((..((((....(((((((((((....)))..-------.((.....))....)).))))))..----))))..))))))))..))))............ ( -36.20) >DroYak_CAF1 44714 102 - 1 AUUACUUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUGC-------AGCUGCAUGCAACCGCUCGCAAUUU----CAGCGAGGAGCACACUGUAAACCUCAUUAACU .((((..((((((((((((((((((...))))))......(((((-------(......)))))).))))((.....----..))..))))))))..))))............ ( -40.70) >consensus AUUACUUUGUGCUCCGAGCUGCCAUGUUGUGGCAACAAAAGUUCC_______AGCUGCAUGCAACCGCUCGCAAUUU____CAGCGAGGAGCACACUGUAAACCUCAUUAACU .((((..((((((((..((((....((((((....).................((.....))........)))))......))))..))))))))..))))............ (-23.70 = -24.73 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:10 2006