Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,692,823 – 11,692,916 |
Length | 93 |
Max. P | 0.588397 |
Location | 11,692,823 – 11,692,916 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.09 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -19.83 |
Energy contribution | -22.63 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.08 |
Mean z-score | -2.04 |
Structure conservation index | 0.76 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11692823 93 + 27905053 CAUGUUGCAUUCCAUAAGCCAGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU .((((.(((...(((..((((((....))))))..)))....)))))))..(.(((((..(((.....)))..))))))......--..----------...... ( -27.40) >DroPse_CAF1 34008 95 + 1 ----------GCCAUAAGCCACCAUAAACUGGCCAAUGUAAUUGCGCAUACGACUUGUUGUACAGCACUCAUGAUUUGCAAACACCGGUUCGUUCCCAUGUCGGU ----------.......(((..(((.(((..(((..(((..((((((.(((((....)))))..)).(....)....)))))))..)))..)))...)))..))) ( -17.30) >DroSec_CAF1 29169 93 + 1 CAUGUUGCAUUCCAUAAGCCAGCGUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU ..((((((((..(((..((((((....))))))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -32.10) >DroSim_CAF1 31881 93 + 1 CAUGUUGCAUUCCAUAAGCCAGCGUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU ..((((((((..(((..((((((....))))))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -32.10) >DroEre_CAF1 29691 93 + 1 CAUGUUGCAUUCCAUAAGCCCGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGGGU .((((.(((...(((..(((.((....)).)))..)))....)))))))..(.(((((..(((.....)))..))))))......--..----------...... ( -22.80) >DroYak_CAF1 29873 93 + 1 CAUGCUGCAUUCCAUAAGCCCGCAUAAGCUGGUAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA--GC----------UUGAGU ..((((((((..(((..(((.((....)).)))..((((......)))).....)))..)))))))).((((...))))......--..----------...... ( -24.90) >consensus CAUGUUGCAUUCCAUAAGCCAGCAUAAGCUGGCAAAUGUAAUUGCGCAUACGACAUGUUGUGCAGCAAGCAUGAUAUGCAAAUAA__GC__________UUGAGU .((((.(((...(((..((((((....))))))..)))....)))))))..(.(((((..(((.....)))..)))))).......................... (-19.83 = -22.63 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:01 2006