Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,689,799 – 11,689,889 |
Length | 90 |
Max. P | 0.978040 |
Location | 11,689,799 – 11,689,889 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 76.37 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -14.54 |
Energy contribution | -14.60 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.25 |
Mean z-score | -2.22 |
Structure conservation index | 0.64 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.978040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11689799 90 - 27905053 AUAUAUCUAAGCGGGGGAGGGCUUUUUGCAUGGCAAAAGCUUGCAUUAUUUCCCAAAAAUAUUCCCAU-GGAAGGAUAAAAUCUAUAAAGC---- ...(((((......((((((......((((.(((....)))))))...)))))).......((((...-))))))))).............---- ( -19.00) >DroSec_CAF1 26291 82 - 1 ------------GGGGAAGAACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU-GGAAGGAUAAAAUCCAUGGAGCCAGG ------------((((((........((((.(((....)))))))...))))))........((((((-(((.........)))))))))..... ( -25.90) >DroSim_CAF1 29065 94 - 1 AUAUAUAUAAAGGGGACAGGACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU-GGAAGGAUAAAAUCCAUAGAGCCAGG ...........((.....(((..(..((((.(((....)))))))..)..))).........((((((-(((.........)))))))))))... ( -25.50) >DroEre_CAF1 26581 94 - 1 AUAUAUCUAACAAGG-GAAGCCUUUUUGUAUGGCGAAAGCUUGCAUUAUUUCCCAAACAUAUUUAUUUCAGGCGGAAAGUAUCCAUAGAUCCAGG ....(((((....((-((((......((((.(((....)))))))...))))))...................(((.....))).)))))..... ( -20.40) >consensus AUAUAUCUAA__GGGGGAGGACUUUUUGCAUGGCGAAAGCUUGCAUUAUUUCCCAAAAAUAUUUCUAU_GGAAGGAUAAAAUCCAUAGAGCCAGG .............((((((.......((((.(((....)))))))...))))))...................(((.....)))........... (-14.54 = -14.60 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:00 2006