Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,679,765 – 11,679,857 |
Length | 92 |
Max. P | 0.672178 |
Location | 11,679,765 – 11,679,857 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 80.91 |
Mean single sequence MFE | -24.82 |
Consensus MFE | -17.58 |
Energy contribution | -17.20 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.36 |
Mean z-score | -1.47 |
Structure conservation index | 0.71 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11679765 92 + 27905053 CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG .......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00) >DroPse_CAF1 15898 93 + 1 CACAUCACACAUGGAUAUAGGAAUAACAAAAAAGUGCCUACUUAA----------AGCUACGGUUAACGCGCUCCACCAUGAGCGUGUCCUGCUCGAAAGUGG .......(((.......((((....((......)).)))).((..----------(((...((...((((((((......)))))))))).)))..)).))). ( -21.80) >DroSec_CAF1 16376 92 + 1 CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG .......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00) >DroSim_CAF1 18952 92 + 1 CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUCUGUAUGU----CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG .......--(((....((((((....((((...-----...))))....)----)......(((..((((((((......))))))))...))))))).))). ( -26.00) >DroYak_CAF1 16513 92 + 1 CAAAUCA--CAUGGAAUCAGGAAUAUCAGAAAC-----UACUUUGUAUGU----CUCUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCCGCCCUGAAGUGG .....((--(.........(..((((((((...-----...)))).))))----..)(((.(((..((((((((......))))))))...))).))).))). ( -22.70) >DroAna_CAF1 16777 96 + 1 UUAAUCA--CAUGGAAACAGGAAUAACAAAAAG-----UAUUUUGAGUGUGUCUGUCUUAGGGCUAACGCGCUCCUCCGUGAGCAUGUCCUGCCCUAAAAUGG .....((--((((....)........(((((..-----..))))).))))).((((.(((((((..(((.((((......)))).)))...))))))).)))) ( -26.40) >consensus CAAAUCA__CAUGGAAUCAGGAAUAUCAGAAAC_____UACUCUGUAUGU____CACUUAAGGCUAGCGUGCUCCCCCAUGAGCAUGUCCUGCCCUGAAGUGG .........(((....((((......((((...........))))................(((..((((((((......))))))))...))))))).))). (-17.58 = -17.20 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:56 2006