Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,660,799 – 11,660,908 |
Length | 109 |
Max. P | 0.986924 |
Location | 11,660,799 – 11,660,908 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 77.08 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -20.90 |
Energy contribution | -22.26 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.24 |
Mean z-score | -2.26 |
Structure conservation index | 0.70 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11660799 109 + 27905053 GAAAUCAAGGUGAGGCCGUAAUCCGGGAUUCAGAACCAUUACCUGGUCACGUGAUGGUCAUAUUGAAUCCUUAUGCUACUUGCUACUUGAAUUCACAAACUAUGUUUUA (((.((((((..((..((((....(((((((((.((((((((........))))))))....)))))))))))))...))..)..))))).)))............... ( -31.00) >DroSec_CAF1 166 108 + 1 GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAUCACCGGGUCAUAUGAUGGUCAUAUUGAAUCCUUAUA-AAUGUGCUACUUGAAUUCACAAACUAUGGUUUA (((.(((((....(((.....)))((((((((.((((((((..........))))))))....))))))))....-.........))))).)))..((((....)))). ( -33.20) >DroSim_CAF1 166 108 + 1 GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAUUACCGGGUCACGCGAUGGUCGUAUUGAAUCCUUAUA-AAUGUCCUACUUGAAUUCACAAACUAUAAUUUA (((.(((((...(((.(((.....((((((((((((((((..((.....)).)))))))...)))))))))....-.))).))).))))).)))............... ( -33.30) >DroEre_CAF1 166 89 + 1 GAAAUCAAGGUGAGGCCGCAAGCCGGGAUUCGUGACUA--UA---GUGA-AUCCUGGUUAUAGUGAAUCCUUA--------------UAAAUUCAUCAACUCUGGGUUA .........((((((.(((.((((((((((((......--..---.)))-)))))))))...)))...)))))--------------).((((((.......)))))). ( -24.20) >DroYak_CAF1 166 106 + 1 GAAAUCAAGGUGAGGCCACAAACCGGGAUUCAGGACUA--ACCGGGUCACGUGCUGGUUAUAGUGAAUCCUUACA-AAUGAGCAAAAUAAACUCACCAACUCUGGGUUA ........((((((((((......((((((((..(.((--(((((........))))))))..))))))))....-..)).))........))))))............ ( -27.80) >consensus GAAAUCAAGGUGAGGCCGUAAGCCGGGAUUCAGGACCAU_ACCGGGUCACGUGAUGGUCAUAUUGAAUCCUUAUA_AAUGUGCUACUUGAAUUCACAAACUAUGGUUUA .........(((((((.....)))((((((((((((((((((........)))))))))...))))))))).....................))))............. (-20.90 = -22.26 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006