Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 11,653,777 – 11,653,897 |
Length | 120 |
Max. P | 0.841593 |
Location | 11,653,777 – 11,653,897 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.03 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -28.42 |
Energy contribution | -29.43 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.85 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11653777 120 - 27905053 ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUUGAUUUGAUGGAAUUGGAUCGAAUUUCGCUGUCUGACCGCCCAUUUCCAUUUUUAGCCAACGCCUAAGCCAAUAUAAGCGCU .....((((..(((((...(((((((((((((((((((..((((....))))..)))))))))..((.(.....).)).))))))..))))..))))).))))..((........))... ( -31.90) >DroSim_CAF1 36775 120 - 1 ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUUGAUUUGAUUGAAUUGGAUCGAAUUUCGCUGUCUGAACGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAAUAUAAGCGCA .....((((..((((((..(((.(((((((((((((((..((((....))))..)))))))))..((.((....)))).))))))..)))..)))))).))))..((........))... ( -36.60) >DroEre_CAF1 32622 115 - 1 ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU-----GAUUGAAUUGGAUCGAAUUUCACUGUUUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAACACAUGCGCU .....((((..((((((..(((.((((((((((((((..-----.))))))))((.((((((......))))))))...))))))..)))..)))))).)))).(((((.....)).))) ( -33.50) >DroYak_CAF1 35338 115 - 1 ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU-----GAUUGAAUUGGAUCGAAUUUCACUGUUUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGUCAACACAAGAGCU .....((((..((((((..(((.((((((((((((((..-----.))))))))((.((((((......))))))))...))))))..)))..)))))).))))................. ( -31.90) >consensus ACGUCAGGCCCUUGGCCUUGAAAGAAAUGAGUUCGAUUU_____GAUUGAAUUGGAUCGAAUUUCACUGUCUGACCGCCCAUUUCCAUUUUUGGCCAACGCCUAAGCCAACACAAGCGCU .....((((..((((((..(((.(((((((((((((((......)))))))))((.((((((......))))))...))))))))..)))..)))))).))))................. (-28.42 = -29.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:47 2006