Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,674,336 – 1,674,438 |
Length | 102 |
Max. P | 0.657766 |
Location | 1,674,336 – 1,674,438 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 85.80 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -15.87 |
Energy contribution | -15.77 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -2.11 |
Structure conservation index | 0.72 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1674336 102 - 27905053 CUGUUUUGGAGCUAAGAGAGAAGGAGCUUUUAUCAAUAAAUAUAUAGAAUGACAAGUCAUUCUGAUGUAAAAAAUUA--CGAUCUGAGAAUAAAAUGCAAGAAA--- ((.(((((....))))).)).....(((((((((..........((((((((....)))))))).(((((....)))--))......).)))))).))......--- ( -17.10) >DroSec_CAF1 5234 105 - 1 UUGUUUCGGAGCUCGGAGAGAGGGAGCUUUUAUCAAAAAAU--AUAGAAUGACAAGUCAUGCUGAUGUGAAAAGUUGUUUGCUCUGAGAAUGAAAUGUAAGAAAACA ..((((((...(((((((..(((.((((((..(((....((--.(((.((((....)))).))))).))))))))).))).)))))))..))))))........... ( -26.30) >DroSim_CAF1 3707 103 - 1 UUGUUUCGGAGCUCAGAGAGAGGGAGCUUUUAUCAACAAAU--AUAGAAUGACAAGUCAUGCUGAUAUGAAAAGUUG--UGCUCUGAGAAUAAAAUGUAAGAAAACA ...(((((((((.(((.(((((....)))))..........--.(((.((((....)))).)))..........)))--.))))))))).................. ( -22.30) >consensus UUGUUUCGGAGCUCAGAGAGAGGGAGCUUUUAUCAAAAAAU__AUAGAAUGACAAGUCAUGCUGAUGUGAAAAGUUG__UGCUCUGAGAAUAAAAUGUAAGAAAACA ...(((((((((...((.(((((...))))).))..........(((.((((....)))).)))................))))))))).................. (-15.87 = -15.77 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:18 2006