| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 11,652,554 – 11,652,674 |
| Length | 120 |
| Max. P | 0.647261 |
| Location | 11,652,554 – 11,652,674 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.44 |
| Mean single sequence MFE | -27.76 |
| Consensus MFE | -20.46 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 11652554 120 + 27905053 UAUUGACAUAUGCUUGUUUGGUUGAUUCCAUCAAUCGGAAUAGAGAAGAAUCGGAAGAAUCUUCCAGCAAAUGCAAAACAAGUUCAAGCUCGGGCAAAGGAAACUAGUUUCCUUUCACUU ..(((.(((.((((..((((((((((...))))))))))...(.(((((.((....)).)))))))))).)))))).....((((......))))((((((((....))))))))..... ( -33.70) >DroSec_CAF1 33346 111 + 1 UAUUGACAUGUGCUUGUUUGCUUGAUUCCAUCAAUCGGAAUGGAGAAG---------AAUCUUCCAGCAAAUGCAAAACAAGUUCAAGCUCGGGCAAAGGAAACUAGUUUCCUUUCACUU ...(((....((((((...((((((((((.......))))((((((..---------..)).))))((....)).........)))))).))))))(((((((....))))))))))... ( -29.40) >DroSim_CAF1 35540 111 + 1 UAUUGACAUGUGCUUGUUUGCUUGAUUCCAUCAAUCGGAAUGGAGAAG---------AAUCUUCCAGCAAAUGCAAAACAAGUUCAAGCCCGGGCAAAGGAAACUAGUUUCCUUUCACUU ........((.((((((((.(((.(((((.......))))).)))...---------.........((....)).)))))))).)).((....))((((((((....))))))))..... ( -28.80) >DroEre_CAF1 31363 114 + 1 UAUUAACAUGUACCUGUUUGAUUAUUUCCCUCAAUCGGAAUAGAGAUG------AAGAAUCUUCCAGCAAAUGCAAAACAAGUUCAAGCUCGGGCAAAGGAAACAAGUUUCCUUUCACUU ............((.((((((...............(((....((((.------....))))))).((....)).........))))))..))(.((((((((....))))))))).... ( -21.20) >DroYak_CAF1 34042 114 + 1 UAUUGACAUAUGCUUGUUUGAUUACUUCCCUCAAUCGGAAUAGAGAUG------AAGAAUCUUCCAGCAAAUGCAAAACAAGUUCAGGCUCGGGCAAAGGAAACUAGUUUCCUUUCACUU ..(((.(((.((((.(...((((.((((.(((..........)))..)------)))))))..).)))).)))))).....((((......))))((((((((....))))))))..... ( -25.70) >consensus UAUUGACAUGUGCUUGUUUGAUUGAUUCCAUCAAUCGGAAUAGAGAAG______AAGAAUCUUCCAGCAAAUGCAAAACAAGUUCAAGCUCGGGCAAAGGAAACUAGUUUCCUUUCACUU ........((.((((((((..((.(((((.......))))).))......................((....)).)))))))).)).((....))((((((((....))))))))..... (-20.46 = -21.30 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:45 2006